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c2b86379-bd31-4c30-aa6f-eeb60e07e050-asg-MAGScoT_cleanbin_000099

Identifiers
BioSample: SAMEA114406450; SRA: ERS16395124
Organism
Dehalococcoidia bacterium
cellular organisms; Bacteria; Bacillati; Chloroflexota; Dehalococcoidia; unclassified Dehalococcoidia
Attributes
broad-scale environmental contextaquatic biome
collected byNICOLE WEBSTER
collection date2020-11-01
depth9.0
environmental mediumadult sponge tissue
geographic locationAustralia
host life stageadult
hostXestospongia bergquistia
host sexnot collected
host taxonomy ID1088918 (1088918)
identified byNICOLE WEBSTER
investigation typemetagenome-assembled genome
isolation sourceSponge: Xestospongia bergquistia
tissueWHOLE ORGANISM
project nameASG
sample namec2b86379-bd31-4c30-aa6f-eeb60e07e050
specimen voucherNOT PROVIDED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
GALGeomar Helmholtz Centre
GAL_sample_idNOT PROVIDED
INSDC center nameTree of Life Programme
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Idc2b86379-bd31-4c30-aa6f-eeb60e07e050
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwaremetaMDBG
binning parameterscoverage; graph; hic-mapping
binning softwareMAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
collecting institutionAIMS
completeness score91.91
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score0.0
geographic location (latitude)18.97
geographic location (longitude)146.56
geographic location (region and locality)Queensland | Great Barrier Reef | Havanna Island
habitatReef
identifier_affiliationAIMS
local environmental contextmarine reef biome
metagenomic sourcesponge metagenome
number of standard tRNAs extracted51
sample derived fromSAMEA114406366
scientific_nameDehalococcoidia bacterium
sequencing methodPacbio Sequel II
specimen idGHC0000118
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity markertaxonomic novelty determined using RED
tolidodXesBerg1.Dehalococcoidia_6
BioProject
PRJEB66841 odXesBerg1.metagenome
Retrieve all samples from this project

Submission
EBI; 2023-09-22
Accession:
SAMEA114406450
ID:
37510002

BioProject Nucleotide

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