Metagenome-assembled genome: ERR3525236_binner12_R... - BioSample

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Result Filters

Identifiers: BioSample: SAMEA115331968; Sample name: ERR3525236_binner12_Refined_18; SRA: ERS18329154

Organism: uncultured Sphingomonas sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas; environmental samples

Attributes

broad-scale environmental context	water
collection date	2012-04-27
environmental medium	atlantic
investigation type	metagenome-assembled genome
project name	22 environmental metagenomic surface water (20 m depth) samples from two transects to the Southern and Atlantic Ocean (RV Polarstern ANT-XXVIII/4 and ANT-XXVIII/5 in 2012). Samples were filtered on 0.2µm polycarbonate filters and stored at -80°C until extraction and sequencing unsing an Illumina HiSeq 25002500.
geographic location	Atlantic Ocean
isolation source	marine metagenome
assembly software	metaspades_v3.15.3
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured Sphingomonas sp.
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA5958366
geographic location (longitude)	-25.31800000 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	99.99 %
contamination score	0.02 %
geographic location (latitude)	-1.48650000 DD
scientific_name	uncultured Sphingomonas sp.
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2500
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR3525236 of study ERP117360.