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TE-11nov19-267: freshwater MAG from Lake Thun

Identifiers
BioSample: SAMEA115862035; SRA: ERS20608634
Organism
Limnohabitans sp.
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Limnohabitans; unclassified Limnohabitans
Attributes
broad-scale environmental contextfreshwater biome
collection date2019-11-11
environmental mediumnatural lake
geographic locationSwitzerland
isolation sourcefreshwater lake
project namePRJEB35640
sample nameTE-11nov19-267
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2024-07-23T12:49:33Z
ENA-LAST-UPDATE2024-07-23T12:49:33Z
External IdSAMEA115862035
INSDC center nameBIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public2024-07-23T12:49:33Z
INSDC last update2024-07-23T12:49:33Z
INSDC statuspublic
Submitter IdTE-11nov19-267
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMegahit
binning parameterscoverage and kmer
binning softwareMetabat2
completeness score60.82
completeness softwareCheckM
contamination score2.13
geographic location (latitude)46.683333
geographic location (longitude)7.716667
local environmental contextfreshwater lake biome
metagenomic sourcefreshwater metagenome
sample derived fromERS6344556
scientific_nameLimnohabitans sp.
taxonomic identity markermulti-marker
Description

Limnohabitans sp. assembled from Lake Thun

Submission
EBI; 2024-07-25
Accession:
SAMEA115862035
ID:
42815159

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