Metagenome-assembled genome: SRR748204_bin.37_CONC... - BioSample

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Result Filters

Organism: uncultured Nitrospiraceae bacterium
cellular organisms; Bacteria; Nitrospirota; Nitrospiria; Nitrospirales; Nitrospiraceae; environmental samples

Attributes

collection date	2012-04-30
broad-scale environmental context	Environmental
local-scale environmental context	Terrestrial
environmental medium	Soil
geographic location	Malaysia
investigation type	metagenome-assembled genome
isolation source	soil metagenome
project name	Swamp soil diversity.
sample name	SRR748204_bin.37_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14037609
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:07Z
INSDC last update	2023-01-03T00:32:07Z
INSDC status	public
Submitter Id	SRR748204_bin.37_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	minia v2.0.7
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	79.49
completeness software	CheckM
contamination score	2.23
geographic location (latitude)	4.90315
geographic location (longitude)	103.37013
metagenomic source	soil metagenome
sample derived from	SAMN01911457
scientific_name	uncultured Nitrospiraceae bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR748204 of study SRP018759.