uncultured Candidatus Nitrosoarchaeum sp.

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Result Filters

Organism: uncultured Candidatus Nitrosoarchaeum sp.
cellular organisms; Archaea; TACK group; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales; Nitrosopumilaceae; Nitrosarchaeum; environmental samples

Attributes

collection date	2019-11-05
broad-scale environmental context	freshwater lake
local-scale environmental context	large lake
environmental medium	fresh water
geographic location	Italy
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	LH-05nov19-164
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-06-30
ENA-LAST-UPDATE	2022-06-30
External Id	SAMEA14081562
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-06-30T00:19:07Z
INSDC last update	2022-06-30T00:19:07Z
INSDC status	public
Submitter Id	LH-05nov19-164
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	96.37
completeness software	checkm
contamination score	1.94
geographic location (latitude)	46.009123
geographic location (longitude)	9.021579
metagenomic source	freshwater metagenome
sample derived from	ERS4065071
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach