Thaumarchaeota archaeon

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Result Filters

Organism: Nitrososphaerota archaeon
cellular organisms; Archaea; TACK group; Nitrososphaerota; unclassified Nitrososphaerota

Attributes

collection date	2019-11-13
broad-scale environmental context	freshwater lake
local-scale environmental context	large lake
environmental medium	fresh water
geographic location	Switzerland
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	ZE-13nov19-233
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-06-30
ENA-LAST-UPDATE	2022-06-30
External Id	SAMEA14081581
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-06-30T00:19:08Z
INSDC last update	2022-06-30T00:19:08Z
INSDC status	public
Submitter Id	ZE-13nov19-233
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	74.17
completeness software	checkm
contamination score	0.97
geographic location (latitude)	47.300659
geographic location (longitude)	8.578777
metagenomic source	freshwater metagenome
sample derived from	ERS6344560
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach