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Acidobacteria bin RBC012

Identifiers
BioSample: SAMEA6595196; SRA: ERS4359477
Organism
uncultured Acidobacteriota bacterium
cellular organisms; Bacteria; Acidobacteriota; environmental samples
Attributes
collection date2010-09-23
broad-scale environmental contextwastewater treatment plant
local-scale environmental contextwastewater treatment plant
environmental mediumbiofilm
geographic locationCanada
investigation typemetagenome-assembled genome
isolation sourcewastewater biofilm
project nameRBCs
sample nameAcidobacteria sp. RBC012
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2020-04-14T16:28:03Z
ENA-LAST-UPDATE2020-02-27T20:26:23Z
External IdSAMEA6595196
INSDC center nameUNIVERSITY OF WATERLOO
INSDC first public2020-04-14T16:28:03Z
INSDC last update2020-02-27T20:26:23Z
INSDC statuspublic
Submitter IdAcidobacteria sp. RBC012
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes
binning parametersTNF and coverage
binning softwaremetabat
completeness score98.26
completeness softwareCheckM
contamination score1.74
geographic location (latitude)43.524549
geographic location (longitude)-80.264446
metagenomic sourcewastewater metagenome
sample derived fromERS3016387
scientific_nameuncultured Acidobacteria bacterium
sequencing methodIllumina HiSeq
taxonomic identity markermulti marker approach
Description

This sample represents a MAG from the metagenomic sample ERS3016387

BioProject
PRJEB30654 Metagenomic sequencing of Rotating Biological Contactor biofilm
Retrieve all samples from this project

Submission
EBI; 2020-04-18
Accession:
SAMEA6595196
ID:
14637190

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