Chicken_20_mag_47

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Result Filters

Organism: Escherichia coli
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Attributes

collection date	not collected
broad-scale environmental context	Gallus gallus domesticus
local-scale environmental context	Caeca
environmental medium	Gut contents
geographic location	United Kingdom
investigation type	metagenome
isolation source	metagenome
project name	PRJEB33338
sample name	Chicken_20_mag_47
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-09-09T17:06:41Z
ENA-LAST-UPDATE	2020-08-21T15:17:14Z
External Id	SAMEA7202348
INSDC center name	THE ROSLIN INSTITUTE
INSDC first public	2020-09-09T17:06:41Z
INSDC last update	2020-08-21T15:17:14Z
INSDC status	public
Submitter Id	Chicken_20_mag_47
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Metabat2
binning parameters	-v -m 2000
binning software	Metabat2
common name	Escherichia coli
completeness score	99.37
completeness software	CheckM
contamination score	0.18
geographic location (latitude)	55.86513
geographic location (longitude)	-3.197356
metagenomic source	Gallus gallus
sample derived from	ERS3558295
scientific_name	Escherichia coli
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	CheckM_markers