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Animal sample from Aythya fuligula

Identifiers
BioSample: SAMN12621346; Sample name: Tufted Duck sample for G10K-VGP reference genome; SRA: SRS10850813
Organism
Aythya fuligula (tufted duck)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
Package
Model organism or animal; version 1.0
Attributes
isolatebAytFul2
development stageadult
sexfemale
tissuelung (powdered)
biomaterial providerThe Roslin Institute, University of Edinburg
collected byPatrik Ellstrom, Mahmoud Naguib, Josef Jarhult
collection date2017-08-28
geographic locationSweden
latitude and longitude59.8509 N 17.6300 E
storage conditionsfrozen
treatmentethanol
subject IDTD52037
Description

The tufted duck (Aythya fuligula) is a common, migratory diving duck of Eurasia. It flocks in large groups with other duck species on larger lakes and is therefore a target of avian influenza epidemiologists. In 2016/2017 the tufted duck was one of the main victim species of a large outbreak of avian influenza in wild birds, particularly in Europe. Several research groups hope to find clues about the differences in avian influenza susceptibility among duck species in wild populations. This sample is from an experimental group that was studied for their detailed responses to avian influenza infection by a consortium of Swedish (Mahmoud Naguib, Patrik Ellstrom, Josef Jarhult), German (Ralf Muller, Elinor Jax, Robert Kraus), Scottish (Jacqueline Smith, Lel Eory, Richard Kuo and Amanda Warr) and Danish researchers among others. For the comparative genomics aspect of this project, a chromosome level reference assembly of this assembly was generated as part of the G10K-VGP Project.

BioProjects
PRJNA602521 Aythya fuligula isolate:bAytFul2
Retrieve all samples from this project

PRJNA561953 Aythya fuligula isolate:bAytFul2
Retrieve all samples from this project

PRJNA561952 Aythya fuligula isolate:bAytFul2
Retrieve all samples from this project

Submission
G10K, Erich Jarvis; 2019-08-22
Accession:
SAMN12621346
ID:
12621346

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