Cladonia_metabat2_11

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Result Filters

Organism: Caulobacter sp. S45
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter; unclassified Caulobacter

Attributes

collection date	2014-05-21
broad-scale environmental context	host organism
local-scale environmental context	organic feature
environmental medium	organic material
geographic location	Austria
investigation type	metagenome-assembled genome
isolation source	Cladonia metagenome
project name	Reconstruction of Bacterial Metagenome-Assembled Genome Sequences from Different Lichen Metagenomes
sample name	Lichen_MAGs_cladonia1
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2020-05-28T04:05:20Z
ENA-LAST-UPDATE	2020-05-27T10:25:31Z
External Id	SAMEA6862608
INSDC center name	INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC first public	2020-05-28T04:05:20Z
INSDC last update	2020-05-27T10:25:31Z
INSDC status	public
Submitter Id	Lichen_MAGs_cladonia1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	metabat2
completeness score	95.21
completeness software	checkm
contamination score	2.45
geographic location (latitude)	47.38444444
geographic location (longitude)	15.575
metagenomic source	Cladonia furcata
sample derived from	ERS4590031
scientific_name	Caulobacter sp. S45
sequencing method	Illumina HiSeq
taxonomic identity marker	multi-markers approach using the Bin Annotation Tool