MAG Loc090519-5m_bin-0379 from assembly ERS4600486

Identifiers: BioSample: SAMEA6951473; SRA: ERS4661349

Organism: uncultured beta proteobacterium
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; environmental samples

Attributes

ammonium	0.443483563390432
chloride	253.6
collection date	2009-05-19
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Switzerland
investigation type	metagenome
isolation source	lake water
nitrate	0.343521237837655
nitrite	0.220718375845914
oxygen	0.149999865221176
pH	7.46
project name	microbes in stratified freshwaters
sample name	Loc090519-5m_bin-0379
sulfate	170.3
temperature	12.6
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T04:03:55Z
ENA-LAST-UPDATE	2020-06-18T09:06:40Z
External Id	SAMEA6951473
INSDC center name	BILS
INSDC first public	2020-06-15T04:03:55Z
INSDC last update	2020-06-18T09:06:40Z
INSDC status	public
Submitter Id	Loc090519-5m_bin-0379
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	89.47
completeness software	checkm
conductivity.	0.573
contamination score	4.38
ferric iron	0
ferrous iron	0
fluoride	6
geographic location (depth)	5
geographic location (latitude)	47.01861111111111
geographic location (longitude)	6.996666666666667
gtdb_taxonomy	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rhodoferax
iron	0
metagenomic OTU	anoxic_mOTU_0583
metagenomic source	lake water metagenome
region	Neuchâtel
sample derived from	ERS4600486
sample owner	Stefan Bertilsson
scientific_name	uncultured beta proteobacterium
sequencing method	NovaSeq
site name	Loclat
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioProject: PRJEB38681
Retrieve all samples from this project

Submission: EBI; 2020-06-16

Accession:: SAMEA6951473
ID:: 15263096

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MAG Loc090519-5m_bin-0379 from assembly ERS4600486

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