Patescibacteria group bacterium UBA4664

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Result Filters

Organism: Patescibacteria group bacterium UBA4664
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Patescibacteria group; unclassified Patescibacteria group

Attributes

collection date	2016-04-20
broad-scale environmental context	freshwater lake
local-scale environmental context	reservoir
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35770
sample name	RH-20apr16-362
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-06-30
ENA-LAST-UPDATE	2022-06-30
External Id	SAMEA14306478
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-06-30T00:19:15Z
INSDC last update	2022-06-30T00:19:15Z
INSDC status	public
Submitter Id	RH-20apr16-362
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	48.89
completeness software	checkm
contamination score	1.01
geographic location (latitude)	48.846361
geographic location (longitude)	14.487639
metagenomic source	freshwater metagenome
sample derived from	ERS4146217
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach