Pathogen: environmental/food/other sample from Esc... - BioSample

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Result Filters

Organism: Escherichia coli O155:H21
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli

Attributes

serotype	O155:H21
strain	NWU_1
collected by	North West University
collection date	2021-04-03
geographic location	South Africa
isolation source	North West province, South Africa
latitude and longitude	27.00 S 26.00 E
genotype	UIDA
passage history	Eschericia coli - STEC
pathotype	Eschericia coli - STEC
Tax ID	3038394

Description: Genomic DNA was extracted from two aEPEC O177 isolates (CF-154-A and CF-334-B) obtained from the Department of Microbiology, at NWU. The gDNA was sequenced using Illumina MiSeq platform. After sequencing FASTQ files were obtained. Raw reads were cleaned and assembled into contigs using FASTQC (v.0.11.5) SPAdes (v3.13.0), respectively. The genome annotation was carried out using PGAP, v.2.0 and RAST (v.2.0). The genome maps were drafted using PATRIC (v.3.6.2).