broad-scale environmental context | Human digestive system |
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collection date | 2019-05-01/2020-10-30 |
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environmental medium | faeces |
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geographic location | China |
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investigation type | metagenome-assembled genome |
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isolation source | human feces metagenome |
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project name | Parkinson's disease has been improved to association with gastrointestinal symptoms and gut microbiota disorders, probiotics is considered as a technique for GI symptoms, while the regulative effect of probiotics on Parkinson's disease is limited. The supplementary treatment of Probio-M8 on Parkinson has been investigation. |
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sample name | SRR16279986_bin.51_MetaWRAP_v1.3_MAG |
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ENA-CHECKLIST | ERC000047 |
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ENA-FIRST-PUBLIC | 2023-07-20T12:20:56Z |
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ENA-LAST-UPDATE | 2023-07-20T12:20:56Z |
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External Id | SAMEA114122191 |
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INSDC center alias | EMG |
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INSDC center name | EMG |
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INSDC first public | 2023-07-20T12:20:56Z |
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INSDC last update | 2023-07-20T12:20:56Z |
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INSDC status | public |
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Submitter Id | SRR16279986_bin.51_MetaWRAP_v1.3_MAG |
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assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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assembly software | metaspades v3.15.3 |
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binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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binning software | MetaWRAP v1.3 |
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broker name | EMG broker account, EMBL-EBI |
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completeness score | 95.94 |
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completeness software | CheckM |
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contamination score | 0.37 |
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geographic location (latitude) | 36.46 |
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geographic location (longitude) | 115.99 |
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local environmental context | colon |
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metagenomic source | human feces metagenome |
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sample derived from | SAMN22185041 |
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scientific_name | uncultured Prevotellaceae bacterium |
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sequencing method | Illumina HiSeq 2500 |
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taxonomic classification | The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__;s__ |
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taxonomic identity marker | multi-marker approach |
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