Herschel Island surface seawater MAG - HER19_SLT_2... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Candidatus Poseidoniaceae archaeon
cellular organisms; Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia; Candidatus Poseidoniales; Candidatus Poseidoniaceae; unclassified Candidatus Poseidoniaceae

Attributes

broad-scale environmental context	marine biome [ENVO:00000447]
collection date	2019-08-02
environmental medium	sea water [ENVO:00002149]
geographic location	Canada
investigation type	metagenome
isolation source	sea water
project name	HER19_HER22_MetaG
sample name	HER19_SLT_250_bin_105_1
ENA first public	2024-01-25
ENA-CHECKLIST	ERC000047
INSDC center name	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC status	public
Submitter Id	HER19_SLT_250_bin_105_1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Megahit v1.2.9
binning parameters	MetaWrap v1.3.2 was used with the following parameters: -m 200 -t 20 --metabat2 �maxbin2 �concoct �run-checkm ; Followed by MetaWrap bin_refinement with the following parameters: -c 50 -x 61
binning software	MetaWrap v1.3.2
completeness score	76
completeness software	CheckM v1.2
contamination score	0.4
geographic location (latitude)	69.5497186
geographic location (longitude)	-139.0415437
local environmental context	marine photic zone [ENVO:00000209]
metagenomic source	marine metagenome
sample derived from	ERS16475399,ERR12120024
scientific_name	Candidatus Poseidoniaceae archaeon
sequencing method	Illumina HiSeq3000
taxonomic identity marker	Multi-marker approach

Description: This sample represents a manually-refined metagenome-assembled genome recovered a metagenome from an Illumina paired-end read metagenome of a surface seawater sample collected around Herschel Island, Canada. The metagenome sample and related assembly can be found under ERS16475399, ERR12120024