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Rice cold stress germination cDNA library

Identifiers
BioSample: SAMN00164946; EST: LIBEST_011160
Organism
Oryza sativa Japonica Group (Japanese rice)
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Attributes
cultivarPI560247
tissuecoleotile, radicle, prophyll, immature leaf
development stageembryo at different stages of germination and shoots of germinated seeds under chilling stress (13oC/10oC)
lab hostSolR
tissueseedlings
vectorLambda Uni-Zap XR excised as pBluescript
v_typeplasmid
re_1EcoRI
re_2XhoI
Description

The cDNAs were derived from reverse transcription of mRNA samples from seeds at different stages of germination and seedlings at early phase of growth under chilling stress (13oC/10oC). The mRNA pool was used as template for double stranded cDNA synthesis using the Stratagene Uni-Zap XR cDNA synthesis and library kit. A total of 150,000 phages were excised from the primary library as pBluescript phagemid clones. Enrichment of the primary excised library with chilling-induced transcripts was performed by hybridizing the primary excised library colony lifts with the PCR-select subtraction product, with cold germinated cDNA as tester and control temperature-germinated cDNA as driver.

Submission
University of Arkansas, Benildo G. de los Reyes; 2002-08-28
Accession:
SAMN00164946
ID:
164946

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