Molecular Pathogenesis
RECQL4, pathogenic variants in which cause BGS, encodes ATP-dependent DNA helicase Q4, a protein of 1,208 amino acids belonging to superfamily II of helicases, known as RecQ, categorized by a 3'-5' polarity of unwinding double-stranded DNA and RNA-DNA hybrids to produce single-stranded DNA templates. At least five RecQ human paralogs are known with distinct but partially overlapping roles: RECQL, BLM, WRN, RECQL4, and RECQL5. Pathogenic variants in BLM are associated with Bloom syndrome; pathogenic variants in WRN are associated with Werner syndrome; both are autosomal recessive chromosome instability conditions characterized by predisposition to cancer and/or premature aging. These features are shared by RECQL4-associated autosomal recessive RTS and by the phenotypically overlapping RAPADILINO and BGS, characterized by genetic instability, growth deficiency, and cancer predisposition. To date, no human disease has been associated with RECQL or RECQL5.
RecQ helicases have essential functions not only at various stages of DNA processing (replication, recombination, repair, telomere maintenance) but also in translation, RNA processing, mtDNA maintenance, and chromosome segregation [Croteau et al 2014]. Since they act in virtually all aspects of DNA metabolism, perturbation of their expression and biochemical activity leads to genomic instability, resulting in disease and cancer predisposition [Bochman 2014].
Gene structure.
RECQL4 has 21 exons, spanning more than 6.5 kb. The gene has a coding sequence consisting of 3,627 bp, and its expression is regulated by a housekeeping promoter containing the binding sites for the transcription factors Sp1 and AP2. It encodes a 133-kd protein of 1,208 amino acids, RECQ protein-like 4 (RECQL4), which contains the DNA helicase domain exons homologous to the E coli RecQ helicase and shared by all five members of the RecQ family in humans. The RECQL4 helicase domain, including the ATP binding domain (aa 489 to 662) and the C-terminal domain (aa 683 to 850) is encoded by exons 8 to 15. RECQL4 is unique for having 13 introns composed of fewer than 100 bp, a feature predisposing to inefficient splicing [Wang et al 2002]. For a detailed summary of gene and protein information, see Table A, Gene.
Pathogenic variants. To date, 11 different pathogenic variants have been identified in seven families:
c.496C>T (p.Gln166Ter) and c.3151A>G (p.Ile1051Val) – compound heterozygous in two terminated pregnancies [
Siitonen et al 2009]
c.2492_2493del and c.2506_2518del – compound heterozygous in a child with a severe BGS phenotype who developed a midline NK/T lymphoma at age 2.5 years [
Debeljak et al 2009]
c.2059-1G>C and c.2141_2142del – compound heterozygous in a fetus with (prenatally diagnosed) severe BGS [
Cao et al 2015]
An intron 12 through exon 18 deletion (1,614-bp deletion and 1-bp G insertion; g.145737562_145739175delinsC) – homozygous in a Japanese boy age four years with café au lait-like spots but no poikiloderma [
Kaneko et al 2017]; predicted to remove the helicase motif from IV to VI
Interestingly both missense variants p.Arg1021Trp and p.Ile1051Val are located in the RecQ C-terminal region (RQC), which is essential for proper function not only of RECQL4 but also of its paralogs [Mojumdar et al 2017].
Of the 11 RECQL4 pathogenic variants reported to date:
Seven have been detected only in BGS.
The p.Arg1021Trp and c.2492_2493del variants were observed in BGS and RTS.
The recurrent c.1573del has been observed in BGS, RTS, and RAPADILINO.
Notwithstanding the small number of unrelated cases confirmed by molecular diagnosis, compound heterozygosity is observed in more than half of the cases (4 vs 3 homozygotes), in line with the trend of RTS, where about two thirds of affected individuals reported are compound heterozygotes [Van Maldergem et al 2016].
Table 3.
RECQL4 Pathogenic Variants Discussed in This GeneReview
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DNA Nucleotide Change | Predicted Protein Change | Reference Sequences |
---|
c.496C>T | p.Gln166Ter |
NM_004260.3
NP_004251.3
|
c.1573del | p.Cys525AlafsTer33 |
c.2059-1G>C | p.? |
c.2059-1G>T | p.? |
c.2059-1G>A | p.? |
c.2141_2142del | p.Glu714AlafsTer94 |
c.2335_2356del | p.Asp779CysfsTer57 |
c.2492_2493del | p.His831ArgfsTer52 |
c.2506_2518del | p.Ser836TrpfsTer3 |
c.3056-2A>C | p.? |
c.3061C>T | p.Arg1021Trp |
c.3151A>G | p.Ile1051Val |
g.145737562_145739175delinsC | |
NC_000008.10
|
Variants listed in the table have been provided by the authors. GeneReviews staff have not independently verified the classification of variants.
GeneReviews follows the standard naming conventions of the Human Genome Variation Society (varnomen.hgvs.org). See Quick Reference for an explanation of nomenclature.
Normal gene product. Processing of aberrant DNA structures that arise during DNA replication and repair appears to be a major function of ATP-dependent DNA helicase Q4, the protein encoded by RECQL4 . Disruption of DNA replication fork progression by damage-induced stable secondary structures can impede replication fork progression, resulting in arrest or collapse of the fork leading through impairment in the removal of these aberrant structures to chromosome instability and, ultimately, cell death or cancer. In this respect, ATP-dependent DNA helicase Q4 can be considered a caretaker of the genome [Wu & Hickson 2006].
RECQL4 is a highly multifunctional protein whose biologic role is partially interconnected with the other RecQ family proteins. Its helicase activity, questioned for some time, has been fully demonstrated and assigned to RECQL4 conserved helicase motif and N-terminal domain between amino acids 240 and 400, each independently promoting ATP-dependent DNA unwinding [Xu & Liu 2009]. Also, the puzzling lack of a physical RecQ C-terminal region (RQC), which is an essential part of the catalytic core of all other human paralogs, has now been resolved by the experimental demonstration of the presence of a functional RQC domain in human RECQL4 [Mojumdar et al 2017]. Like all human RecQs, RECQL4 is essential for DNA recombination and DNA repair [Croteau et al 2014] and is involved in telomere maintenance in concert with BLM and WRN [Ghosh et al 2012]. As regards DNA replication, RECQL and RECQL4 are integral components of the human replication complex and play distinct roles in DNA replication initiation and replication fork progression [Xu & Liu 2009, Thangavel et al 2010]. It has been proposed that the helicase activity of RECQL4 may be specialized in the rescue of stalled replication forks or may act in the initial unwinding at the replication origin [Masai 2011].
Absolutely unique to RECQL4 is regulation of maintenance of mitochondrial DNA copy number and transport of p53 (pathogenic variants in which cause Li-Fraumeni syndrome) to mitochondria [De et al 2012]. Both RECQL4 and p53 potentiate the activity of polymerase γ, maintaining the integrity of the human mitochondrial genome [Gupta et al 2014]. Last, but of foremost importance for cancer predisposition associated to defective RECQL4, RECQL4 has an essential role in ensuring correct chromosome segregation through its stable interaction with the ubiquitin ligases UBR1 and UBR2 [Yin et al 2004] involved in the N-end-rule pathway, essential for chromosome stability [Rao et al 2001]. The interconnection between RECQL4 and cohesin pathway is evidenced by downregulation of RECQL4 in cells from individuals with Cornelia de Lange syndrome [Liu et al 2009] and inclusion of RECQL4 among the accessory proteins acting in the cohesin pathway.
Abnormal gene product. Most of the identified RECQL4 variants are frameshift or nonsense variants, predicted to destabilize the mature mRNA and to result in low levels of truncated proteins [Ouyang et al 2008]. Maintenance of the N-terminus, which is essential in initiation of DNA replication, appears indispensable for cell viability, consistent with the finding of rare pathogenic variants (not in homozygous state) in this region in individuals with all RECQL4-related syndromes. The as-yet-limited functional studies of mutated RECQL4 proteins lend support for a helicase-dependent cellular function of RECQL4 [Croteau et al 2012], confirming the postulated association between deleterious variants affecting helicase activity and osteosarcoma [Wang et al 2003].