Conserved Protein Domain Family
PRK14977

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PRK14977: PRK14977 
bifunctional DNA-directed RNA polymerase A'/A'' subunit; Provisional
Statistics
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PSSM-Id: 184940
Aligned: 2 rows
Threshold Bit Score: 2327.32
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
170291135   11 EEILPYR-LDKVIFGLISPADARKIGFIEITEPTAYDEGGLPVQGGVLDPRLGTINPRQRCPVCGNLPKNCPGHFGRIEL 89  
161527856    1 MSIQAVKaIDGIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCGNTAARCPGHFGHLEL 80  
170291135   90 AMPVIHIGYVKRIKDVLNTVCHKCGKVLLPQERRS--QLIERAHEYARDNPEKVVDDELVREvrdqvkvyAKKHKKCPHC 167 
161527856   81 AEPVLHIAFIDNIYKLLQSTCRSCARLKVPQEDLNvfKTIKEKHAAYTVISQKRIPEQIIEK--------AKKAKECPHC 152 
170291135  168 GAPVHRVELEEVYKFIVK-EPEPRRLWPNEIRDILEKISDDDSLLIGFDPKKARPEWAVLTVLLVPPLTARPSIYLETGE 246 
161527856  153 GKTQYELIFTKPTIFVEKtEIGEHRLLPITIRERFSQIIDEDLELLSYDPVTARPEWFVLQAFPVPPVTVRPSIILETGI 232 
170291135  247 RSEDDLTHILVEILKANRKLNNSKKVGAPVSMVESEWDHLQYWVSVFFNNATAGMPVAMQKgTRRPLKSLFQRLSGKEGR 326 
161527856  233 RSEDDLTHKMVDIIRVNQRLKESKDAGTPPLIVQDLVDLLQYHTTTYFDNEVSGIPQAHHR-SGRPLKTLTQRLKGKEGR 311 
170291135  327 LRKNLIGKRVNFSARTVISPDPMIDIDEVGVPVEIAMVLTVPEYVNENNIEKMKELVMRGPDEYPGANAIRKGGVTPISL 406 
161527856  312 FRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPEAVAMKLTIPEIVTEWNIERMRKLVINGPEKFPGVNYIVRPDGVKIRL 391 
170291135  407 KILQRKGKdalreAAEQLEPGDIVERHLMDGDYVIFNRQPSLHKLSMLGHRVKVLPGATFRLHPAVCVPYNADFDGDEMN 486 
161527856  392 DFVEDRST-----IAETLEIGYLVERHLADGDIVMFNRQPSLHQMSIMAHYVRVLPGKTFRLHPSVCPPYNADFDGDEMN 466 
170291135  487 LHVPQILDGSVEVRELMGVKYNMLSPRTGGSIIGARQDFITALYMITKKDALFDKNEATRILSRAGITQ-LPEPAIK-RP 564 
161527856  467 LHVPQSEEARAEAILLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDDTVLTVQEFSNLAMLGGYTDpLPKPGTKtKD 546 
170291135  565 KRLWTGKQLISMLLPKDLNFEGIAK-SAVKASECKDpsclgdgyVLIREGKLLSGVLDDNIVGTlvKGRLTLIDVLIRDY 643 
161527856  547 GPAYTGKQLFSLFLPKDFNYVITSKwSKGTKGQAKD--------VVIKNGELISGVIDKSSIGA--EEPESVLHRIAKDY 616 
170291135  644 GEDVAIEFLNKLLKIASKEVLLYGITNSPKELMIPEEAKREIEEIYSNMKEEVTRLIRSRPitrkitiyRTKEELLRIMR 723 
161527856  617 GNAVGKSFLNSILIMVKQFITHYGFSYGYGDLIVPDKDKQQILDDIQGTYDIVSDLTDQYK--------KGTLKLTRGMK 688 
170291135  724 EEQMLEFDIVQTMDSFWGKVSSVISKYIDPKSNVSIMAKTGARGSMANLAQIVGQVGQQKVKtrigfvltSGRPRKGYKD 803 
161527856  689 PEEALEAYIVNELGKARDKAGSSANDCLPADNAGKIMATTGARGSSLNVGQMAGALGQQSRR--------GNRLHEGYNN 760 
170291135  804 RVLSYFQRGDLSPEARGFVKNSYVSGLNPAEFIFHAMSSRESLIDKGRRTEDSGYFYRRVANSLKDVYVSYDETVRDSMG 883 
161527856  761 RALTHYQEHDDNPDAHGFVKSNYREGLSALEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHG 840 
170291135  884 HIIQFKFGGDGYDPTKLFRNEPVNLERIIRKYVKEERKRGVSKDKIEELLKE------ANLPLSLADAIHGARPKESELK 957 
161527856  841 HIVQFLYGEDGIDVQKSDHGEAFNPSRLIESQKIIDSGKKATKEEIETLAKKytktfnPRLTKLVTDALQNSELSKDGVE 920 
170291135  958 EIIAELKEGFERAKVEVLTPIGLISAQSIAEPTTQMVLRTFHAPGLLAMDVTHGVERFKELV-FYASTSTPTMKIYLKQK 1036
161527856  921 AVCKKGLLLYNKAKVEPGQAVGIITAQSIGEPGTQMTLRTFHFAGIKERNVTLGLPRLIELVdARKKPVTPTMDIYLDDE 1000
170291135 1037 CQEDISNLRKILRNLKELRVRDLIEEYAIDNFNYRLTIKPDKRALENNMipmeRFLNIIRATAKGMKGEVELEDDRIIVD 1116
161527856 1001 SKKSREKAIEVARNVLQTKVSALIADSETDYATEIKLILSENRLRERGC----SIAEVEAALSSNKKFKMETTGELITLK 1076
170291135 1117 LYEAAERdkplQTLRSWSYRILDKPVSGVRGIKRawVETVETDgrKEYIIRTSGSNLAAVLSMSCVDIARTITNDCKEIE 1196
161527856 1077 LVEESDT----ATVIAIRNKVLNTTVKGVPDIER--VTLVQKD--DEWVIQTTGSNVAKVLEVKGIDKRNVRTNNVFEIA 1148
170291135 1197 RVLGIEAARNCIFNELASILEEQGLEVDRRYISLVADIMTYSGTIEAIRlqaagvSSGFFSEMKTPLSKMAFEWTTHVIL 1276
161527856 1149 GTLGIEAARNALINELNSTLEDQGLEVDNRYIMLVADLMCSRGYMQQIG------RHGIAGTKDSVLARAAFEITVPTIA 1222
170291135 1277 NTARRGEVNKILGPLDALIMGQTPPIGTGKVSVLWDFSGKA 1317
161527856 1223 HAALGGEIEQLKGITENVIVGSNIPIGSGTVDLYMQVSKKK 1263
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