3BUA,3BUA,3BUA,3BUA


Conserved Protein Domain Family
apollo_TRF2_binding

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cd11662: apollo_TRF2_binding 
Click on image for an interactive view with Cn3D
TRF2-binding region of apollo and similar proteins
Apollo protein, a DNA repair nuclease, is recruited to telomeres by TRF2 where it is associated with the principle components of the shelterin complex. Apollo is a member of the metallo-beta-lactamase family that is required for telomere integrity during S phase; its 5' exonuclease activity is regulated by binding to TRF2. Apollo and TRF2 also suppress damage to engineered interstitial telomere repeat tracts at the chromosome ends. TRF2, which binds preferentially to positively supercoiled DNA substrates, together with Apollo, negatively regulates the amount of DNA topoisomerases (TOP1, TOP2-alpha, and TOP2-beta) at telomeres since they also act in the same pathway of telomere protection. The shelterin complex protein identified in mammals is principally comprised of 6 factors that act to protect telomeres from DNA damage repair machinery. 3 components (TRF1, TRF2, POT1) bind DNA and 3 components are recruited by these factors (TIN2, RAP1, TPP1).
Links
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Statistics
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PSSM-Id: 212560
Aligned: 9 rows
Threshold Bit Score: 53.62
Created: 10-May-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Comment:Since part of this domain structure is missing, these interactions are only partially represented
  • Structure:3BUA: human apollo peptide binds TRF2; contacts at 4.0A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          # ###########                    
3BUA_E         2 EFRGLALKYLLTPVNFf-QAGYSSRRFDQQVEKYH 35  human
3BUA_F         2 EFRGLALKYLLTPVNFf-QAGYSSRRFDQQVEKYH 35  human
3BUA_G         2 EFRGLALKYLLTPVNFf-QAGYSSRRFDQQVEKYH 35  human
3BUA_H         2 EFRGLALKYLLTPVNFf-QAGYSSRRFDQQVEKYH 35  human
NP_073747    496 EFRGLALKYLLTPVNFf-QAGYSSRRFDQQVEKYH 529 human
XP_001382039 489 EPWILALEYLLTPLSCv-QIGYSSRNFDHQVEKYL 522 gray short-tailed opossum
Q5QJC3       422 FPSELPKQYLLTPLNAlkQSSFCKALKNLFIRWEP 456 chicken
XP_003220546 514 PSRSLLPEYDLSPLNS--RKQWSVYDFDWQVENYL 546 green anole
XP_002932167 476 KHTLLGRKAGLSILPVkkQSRFGPQYFHIQVERYI 510 western clawed frog

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