2GJ3,5NJ8,5NJ8,1D06,5HDS,2W0N


Conserved Protein Domain Family
PAS
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pfam00989: PAS 
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PAS fold
The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya. This domain can bind gases (O2, CO and NO), FAD, 4-hydroxycinnamic acid and NAD+ (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Links
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Statistics
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PSSM-Id: 395786
Aligned: 49 rows
Threshold Bit Score: 46.6417
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
2GJ3_B    5 EIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSngtt----prlVYQALWGRLAQKKPWSGVL 80   Azotobacter vinelandii
P14714  606 NEMVRLIDTAAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVS-DLvedd----sveTVKNMLALALEGSEERGAE 680  thale cress
P42500  626 SEIVRLDYTATVPILAVDVDGLVNGWNIKIAELTGLPIGEATGKHLL-TLveds----stdRVKKMLNLALLGEEEKNVQ 700  soybean
P36505  612 NEMVRLIETATAPILAVDSNGMINGWNAKIAQVTGLPVSEAMGRSLVKDLvtde----svaVVERLLYLALRGEEEQNVE 687  Physcomitrium patens
P42498  597 CEMVRVIETATAPIFGVDSSGCINGWNKKTAEMTGLLASEAMGKSLADEIvqee----sraALESLLCKALQGEEEKSVM 672  thale cress
P55004  600 LELVRLVETATVPIFGVDSSGLINGWNAKIAELTGLQANVAIGKYLIDDVthed----sheTFKALMCRALQGEEDRNVE 675  Japanese morning glory
P23545  234 DRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYHDAFeh--------eEVIQLVEDIFMTETKKCKL 305  Bacillus subtilis s...
P39664   50 RDRDRLLEDLPVSFLLLDADNLVLEANRSARVLLALPPEDYCRPLLEVVRsy--------eLDRLVARCRAANAPQTDRW 121  Synechococcus elong...
P51392  291 AKLETLVSTIADGAILLDKDLRVILVNRTAIENFGWEGKNIAGSIIVDYLpedinqqlfpiLNDIIRKNFLEQSICETQE 370  Porphyra purpurea
5HDS_A   17 KMDDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVapxt---dspeFYGKFKEGVASGNLNTMFE 93   Halorhodospira halo...

2GJ3_B   81 VNRRK--------DKTLYLAELTVAPVLNEAGETI-YYLGMHRDT 116  Azotobacter vinelandii
P14714  681 IRIRAfgp---krKSSPVELVVNTCCSRDMTNNVL-GVCFIGQDV 721  thale cress
P42500  701 FEIKTlgs---kmDSGPISLVVNRCASRDLRDNVV-GVCFVAHDI 741  soybean
P36505  688 IKLKTfgt---qtEKGVVILIVNACSSRDVSENVV-GVCFVGQDV 728  Physcomitrium patens
P42498  673 LKLRKfgqnnhpdYSSDVCVLVNSCTSRDYTENII-GVCFVGQDI 716  thale cress
P55004  676 VKLLKfgn---hpTKEVVYLVVNACTSRDYKNDII-GVCFVGQDI 716  Japanese morning glory
P23545  306 LRLPI--------KIERRYFEVDGVPIMGPDDEWK-GIVLVFHDM 341  Bacillus subtilis subsp. subtilis str. 168
P39664  122 TLTPVnpdplqvvPQTPRPVQGQAIPLSNG------QIGVLIEDR 160  Synechococcus elongatus PCC 7942 = FACHB-805
P51392  371 ICIKLq-------KNYKKTFRVLLTTVLDHKYSILkGIAMTIQDR 408  Porphyra purpurea
5HDS_A   94 YTFDY--------QMTPTKVKVHMKKALSGD-----SYWVFVKRV 125  Halorhodospira halophila
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