1A6C,2Y26


Conserved Protein Domain Family
Nepo_coat

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pfam03391: Nepo_coat 
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Nepovirus coat protein, central domain
The members of this family are derived from nepoviruses. Together with comoviruses and picornaviruses, nepoviruses are classified in the picornavirus superfamily of plus strand single-stranded RNA viruses. This family aligns several nepovirus coat protein sequences. In several cases, this is found at the C-terminus of the RNA2-encoded viral polyprotein. The coat protein consists of three trapezoid-shaped beta-barrel domains, and forms a pseudo T = 3 icosahedral capsid structure.
Statistics
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PSSM-Id: 397456
Aligned: 11 rows
Threshold Bit Score: 202.226
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1A6C_A  177 PTMTWPIQL-GDTFAIDRYYEAKEIKLDGSTSMLSISYNFGGPVKHSKKHAISYSRAVMSRNLGWSGTISGSVKSVSSLF 255  Tobacco ringspot virus
Q9YK98 1268 PTLVLPQAFgGDLPLDLWRGPYTFPLGGGTKRLSTSLDIGTSTTTVSGWRTVSFPAAYALFLQGHGGSLVGEVVHTGSAA 1347 Blackcurrant revers...
P25247 1497 PFITLPHIF-NRLDIGYWRGPTEIDLTSTPAPNAYRLLFGLSTVISGNMSTLNANQALLRFFQGSNGTLHGRIKKIGTAL 1575 Tomato ringspot vir...
Q65029  745 PNFIYSADA-FNGSLKFLTIPPLEYDLSATSAYKSVSLLLGQTLVDGTHKVYNFNNTLLSYYLGIGGIVKGKVHVCSPCT 823  Arabis mosaic virus
P36324  768 PTFVWPPKP-TDISLLKEVWGPYRFTLDGTEAKESFAIMPGTAILHGQQIVRTFPRVVAAHFRSWTGKVRMSIQEVSSIF 846  Raspberry ringspot ...
Q65030  792 PNFIYSADA-FNGSLKFLTIPPLEYDLSATSAYKSVSLLLGQTLVDGTHKVYNFNNTLLSYYLGIGGIVKGKVHVCSPCT 870  Arabis mosaic virus...
Q67703  166 PTLVFDPGV-FNGKFQFLTCPPIFFDLTAVTALKSAGLTLGQVPMVGTTRVYNLNSTLVSCVLGMGGTIRGKVHICAPIF 244  Grapevine fanleaf v...
2Y26_H  166 PTLVFDPGV-FNGKFQFLTCPPIFFDLTAVTALRSAGLTLGQVPMVGTTKVYNLNSTLVSCVLGMGGTVRGRVHICAPIF 244  Grapevine fanleaf v...
P13026  981 SIVTYPISL-EHLKDIEIMLPPRQMAIGNAGSINFPLSFAVQQKSSSGRIAYSYAAGLLSHFLGIGGTIHFKIQCTSSAF 1059 Grapevine chrome mo...
P14547 1007 QPLSYPIEA-RHLTDLNLMLAPKQIAVGTYAMITFPVSLAAKLQSTSGRTAYSYAAGLLSHFLGVGGTIHFVVRTTSSAF 1085 Beet ringspot virus
Q88483 1003 NPLTYPIKP-GHLEDLDLVLKSGSIAIGTYTMTKVPVSLAMRVDSAAKRQAYSYAAGVLSHFLGVGGDIIFSVHSTASTF 1081 Tomato black ring v...
1A6C_A  256 CTASFVIFPWECEAPPTLRQVLWGPHQIMHG-DGQFEIAIKTRLHSAAT-TEEGFGRLGILPl------sGPIAPDAHVG 327  Tobacco ringspot virus
Q9YK98 1348 VSCALHLCISFGGAPPTLEEALVFPGFRLPSgEGKFHIKVQTPYGRLSTlTPDCALYVYLAG--------GPIAVAPMSV 1419 Blackcurrant revers...
P25247 1576 TTCSLLLSLRHKDASLTLETAYQRPHYILA--DGQGAFSLPISTPHAATsFLEDMLRLEIFAi------aGPFSPKDNKA 1647 Tomato ringspot vir...
Q65029  824 YGIVLRVVSEWNGVTNNWNQLFKYPGCYIEE-DGSFAIEIRSPYHRTPLrLIDAQSASSFTStlnfyaisGPIAPSGETA 902  Arabis mosaic virus
P36324  847 LTGTYMVGVSW-NATADLADIVTRKHWIVKS-NEIFEVDLYCPYGENPTfTGQANGKPFIIVhk----lgGIVGPKDSVG 920  Raspberry ringspot ...
Q65030  871 YGIVLRVVSEWNGVTNNWNQLFKYPGCYIEE-DGSFAIEIRSPYHRTPLrLIDAQSASSFTStlnfyaisGPIAPSGETA 949  Arabis mosaic virus...
Q67703  245 YSIVLWVVSEWNGTTMDWNELFKYPGVYVEE-DGSSEVKIRSPYHRTPArLLAGQSQRDMSSlnfy-aiaGPIAPSGETA 322  Grapevine fanleaf v...
2Y26_H  245 YSIVLWVVSEWNGTTMDWNELFKYPGVYVEE-DGSFEVKIRSPYHRTPArLLADQSQRDMSSlnfy-aiaGPIAPSGETA 322  Grapevine fanleaf v...
P13026 1060 VTARLRVA-LW-GDTITLEQLSQMPHVDCDV-DVVSSLKIQSPFYATAN-FGDSGARFWVTPm------sSPMAPETMES 1129 Grapevine chrome mo...
P14547 1086 VTSKLRIA-LW-GTVPETDQLAQMPHVDVEV-NVDASLQIQSPFFSTAN-FGNSGSAFYVSTl------cAPMAPETVET 1155 Beet ringspot virus
Q88483 1082 VSCSLRVA-LW-GTIPTTEELAQIPHVDVTL-DAKATLQIQSPFFATAN-FGDDGTAFYIATl------cAPLAPETMET 1151 Tomato black ring v...
1A6C_A  328 SYEFIVHINTWRP 340  Tobacco ringspot virus
Q9YK98 1420 PYQFCIHLERLVD 1432 Blackcurrant reversion virus
P25247 1648 KYQFMCYFDHIEL 1660 Tomato ringspot virus (isolate raspberry)
Q65029  903 KMPVVVQIEEIAL 915  Arabis mosaic virus
P36324  921 TFGFMIHIHGLTG 933  Raspberry ringspot virus (strain S)
Q65030  950 KMPVVVQIEEIAL 962  Arabis mosaic virus (isolate Syrah)
Q67703  323 RLPIVVQIEEIVR 335  Grapevine fanleaf virus
2Y26_H  323 QLPIVVQIDEIVR 335  Grapevine fanleaf virus
P13026 1130 KLEYYIQILGIDA 1142 Grapevine chrome mosaic virus
P14547 1156 GSEYYIQIKGIEA 1168 Beet ringspot virus
Q88483 1152 GFQYYIHIHGINA 1164 Tomato black ring virus
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