Conserved Protein Domain Family
CIDR1_gamma

?
pfam18562: CIDR1_gamma 
Cysteine-Rich Interdomain Region 1 gamma
Rosetting is the capacity of infected RBCs to bind uninfected RBCs, which is consistently associated with severe malaria in African children. The rosette-forming PfEMP1 adhesins, namely IT4/R29, Palo Alto 89F5 VarO, 3D7/PF13_0003 and IT4/var60, belong to a specific sub-group called groupA/UpsA var genes and all four present a specific Duffy Binding-Like and and Cysteine-Rich Interdomain Region (DBL1alpha1-CIDR1gamma) double domain Head region found at the extracellular region of PfEMP1. This entry represents the CIDR1gamma domain which increases the binding affinity to VarO (Palo Alto VarO parasites).
Statistics
?
PSSM-Id: 408346
Aligned: 34 rows
Threshold Bit Score: 56.1265
Created: 27-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q8I3E5 1451 NSTITVEMIDRRGpfIKEySKDLKNseqskdsndlFKTSRLFKGIRKQEWTCKy-KGENMDLCKLNN 1516 Plasmodium falciparum 3D7
Q8IAK2  499 TFVIDILLNDNKK---KVlSNDLND----------YKECDLFKRLRRQNWNCK--YKCNLHVCELNN 550  Plasmodium falciparum 3D7
Q8I2E3 1436 TTTIDVHMIDRRGpfIKEyLKNSEKs---------FKDSYLFKSLRTEEWECRfnKEKKMDVCKLNK 1493 Plasmodium falciparum 3D7
Q8IFQ6 1366 TTGINVEMINRRGkyIEKhTQDSl-----------FKESSLLKSVRDQKWECTf-INDKMDICKLNN 1420 Plasmodium falciparum 3D7
Q8IBW8 1406 TENITVEMIDRRGinIDKkFEQL------------FKESYLFKSVREQNWECKv-INNDTDVCKLTN 1459 Plasmodium falciparum 3D7
Q8IFQ4 1376 TTTIDVHMIDRRApfIKKyLENSKNsees--nnslFKDSYLFKSVRDQNWECKf-ENENKDVCKLKN 1439 Plasmodium falciparum 3D7
Q8I5L5 1462 STTIDVHMIDRRGpyMEKkSQKLENsen-----plFKTSRLFKGIREQKWTCKf-KDKNTDVCKLDK 1522 Plasmodium falciparum 3D7
Q8I218 2659 STEITVEMIDRREplIKNySKILEEsgns--sdslFKTSRLFKSVRDQQWECRy-KDEKTDICKLKN 2722 Plasmodium falciparum 3D7
Q8IK37 1464 SSTIEVEMIDRRGpyMKEyMKENSKn--------pFKTSRLFKGIRKEQWECKv-TNDDMHICKLDQ 1521 Plasmodium falciparum 3D7
Q8IBX2 1465 TTTITVEMIDRRGpfIKEyLNNSQKseks---ndlFNASRLFKGLRVQNWKCKf-NDQKMNVCHLIN 1527 Plasmodium falciparum 3D7
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap