Conserved Protein Domain Family
Tnp_DNA_bind

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pfam14706: Tnp_DNA_bind 
Transposase DNA-binding
This domain occurs at the C-terminus of transposases including E. coli tnpA. TnpA encodes a transposase and an inhibitor protein, the inhibitor only differs from the transposase by the absence of the N-terminal 55 amino acids, which includes most of this domain. This domain consists of alpha helices and turns, and functions as a DNA-binding domain.
Statistics
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PSSM-Id: 434146
Aligned: 30 rows
Threshold Bit Score: 64.2324
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015257597     309 QWAEHEFGGAPLGDKRLTKRLVDSARRQGEDPLRAFTAVARdDWAAVKGYYRLIDQPE 366 Thioalkalivibrio nitratireducens
Q5ZTU2            12 GWAESEFGIVNFGDKRLSKRLLKIADSFANSPECSINRACD-DWHQSKAAYRFFQNDA 68  Legionella pneumophila subsp. pne...
CCQ33386          25 GWIRAEFRSAEFGDKRLTDRLVQLGDELGSSPAESIPAACG-DWASTKATYRFCDNDS 81 
EHO43271         257 NWAEREFGSIRLYDNRLKQRLYAIADDFYNKPQANIPEACG-GKARTMGAYRFFQNEK 313
jgi:CAP2UW1_0963 291 NWAEEEFATVRWYDERLKRRLVSLALDFFHRPQANVPEACA-SRAGTMAAYRFLRNRQ 347
EEF26458          11 SWFDLEVQGSEFPDTRLRRRFATLLETLWEGMGQTIPFACQ-DWASTKAAYRFLSNDR 67 
EEF23448          11 AWREKEVEASEFQDDRLRKRFGMVLE--LGGDGQRIPFAWQ-DRASTKALIGFLPNDR 65 
Q89T91            21 tWVDREVAGCEFKDERLGRRFCKLLAQIGSDMGQSIPLVCQ-DWANTKAAYRFFSNER 77  Bradyrhizobium japonicum
Q6LKV0             8 DWATSLFGQANLGDPRRTKRLVKVATNLALHTGKSLVKSSQ-QPAEIEGAYRFIRNES 64  Photobacterium profundum
Q7M7F0             8 QWANDTFQHAELGDKRRTNRLVKVACSLANHIGQSLVQSLD-SPADVEAAYRLTRNSA 64  Photorhabdus laumondii subsp. lau...
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