Conserved Protein Domain Family
Retrotran_gag_2

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pfam14223: Retrotran_gag_2 
gag-polypeptide of LTR copia-type
This family is found in Plants and fungi, and contains LTR-polyproteins, or retrotransposons of the copia-type.
Statistics
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PSSM-Id: 464108
Aligned: 41 rows
Threshold Bit Score: 103.087
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002894753   31 TVFFMTTLSDEMVVAVN-NKRYAYEIFEHLEKTYEPRSWGCLC---ALREQFVALKYQDGADMLTHINGLKTLAGRLSNQ 106
EMD33623      119 RDLLARLVPDSVLRRMKrNGDSVADMWIWICSEFEDKTPLVQS---NMLERFQTTRCSEHGDVSKHLDTLGEMVEELSAI 195
EGO02489       37 KNILGCMVSDLTLQQIL-HKDTVVEMWDLIHQENKNKTKLIQA---ELQDKLAALHCPKKGNMHTHIDKIRDMWEQLSAA 112
CEL63601       83 YAQITLNMEDEAMADVM-RTRTARDAWKKVIERWEGKGVQSLS---FLYQQLTTAKIEEDEDIATAFNNIRSLAKKMETL 158
18_pfamImport   9 QKIIVTSIENGPMQYLI-NCESAYQMWEKLLSVYEQKSEVNLY---LLQQKFFSYVKIPTDNISAHIFKLEKLANDLKLA 84 
EGI60441       59 RSLLSKSLDDAHFNLVV-ACKSSADMWKTLVGHYDEVSNTTKL---AALEAYNDYHWKNDMTVTSYISGLMLIENKLKAQ 134
RVW29768       77 RGHILNALSDKLYDPYT-NTYSAREIWEALENKYKAEEEGTKK---FLISQYIDFKFFDEKPLLPQIHELQVIVNKLKVL 152
ERM97817       88 KYALICGLDRDIFKNIE-QASTAYDMWKMLEVTHQGTSAMKETkiqIYSTQYENFKMKSDETIANMYTRFTTITNGLNSL 166
XP_022181581   31 QKYIVTSVDEQPLLYIM-NCETAKEMWDKLLSIYEQKSATSIS---LLQEKFYSYVMDPVDSMAGHISKLENLSKQLAQS 106 green peach aphid
XP_029341276   49 QKCIVTSLDEQPLQYIM-NCDTANGMWNKLLSVYEQMSDTSIT---IVQQKFYRYTMDPKDNIAGHISKLENLSRQLKQL 124 pea aphid
XP_002894753  107 GKPVDDTEKVDQLLSSLPRSGDSFKSHYYI----------QETLIAWISMETNVMAEA 154
EMD33623      196 GVEVSDQDYCAQILKSVPSQYADFLSGMMNagrllgtfitPDQAIQYLKQEYERKRLP 253
EGO02489      113 GVYLTDKEKALNMLRSLSSTCAIFVSQLSVsahmngksinPETLIVNLLQEY-----D 165
CEL63601      159 GEPISDLMLAQMMMTALPPSYSVVTSVIQTtnqa--savnPDMVQDTVLAEEERRRKG 214
18_pfamImport  85 GENISDDMLITKMLMTLPNSYQHFYSAWGSmqsv---nkkVNNLTGRLLLEEARLVHL 139
EGI60441      135 KLNIEKEMIITKIVRGLPQKFDNFKQVWRIcptk---ditVEQLQAKLLDVERDVNVT 189
RVW29768      153 KIELLEAFQVGAIVAKLPSSWKVYRKRILHkse----dysLEEIQKHLHIEEESRLRD 206
ERM97817      167 GKVLTQKDMVTKILRSLTKAYQGKVVAIQEakdl--stlpLEELIGSLMNHEIFMSAQ 222
XP_022181581  107 GEPISDSMLMTKILMTLPDTYKHFYSAWDSmsse---nktLTNLTSRLMVEESRQTQG 161 green peach aphid
XP_029341276  125 GEPISESMLITKILMTLPDTYRHFYSAWDSmhsa---nrtLEQLTTRLMLEETRQVQG 179 pea aphid
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