1XCA,2G78,2CBS


Conserved Protein Domain Family
CRABP2

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cd19461: CRABP2 
Cellular retinoic acid-binding protein 2
Cellular retinoic acid-binding proteins (CRABPs) play a role in the metabolism of vitamin A and retinoic acid. They bind all trans retinoic acid, but not retinol. Retinol, the alcohol form of vitamin A, is an essential dietary nutrient. Within the cell, it gets oxidized into its biologically active acid form, retinoic acid, which interacts with the nuclear receptors (RARs and RXRs). The two CRABPs (CRABP1 AND CRABP2) differ in their pattern of expression across cells and developmental stages. Like other lipid binding proteins, CRABPs serve to solubilize and protect their ligand in the aqueous cytosol and transport retinoic acid between cellular compartments. This subgroup includes CRABP2 (also known as CRABP-II, RBP6) which transports retinoic acid to the nucleus, and delivers all-trans-retinoic acid to nuclear retinoic acid receptors. CRABPs belong to the intracellular fatty acid-binding protein (FABP) family, members of which are small proteins that bind hydrophobic ligands in a non-covalent, reversible manner, and besides CRABPS include the cellular retinol-binding protein (CRBPs) and the fatty acid-binding proteins (FABPs).
Statistics
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PSSM-Id: 381236
Aligned: 5 rows
Threshold Bit Score: 267.699
Created: 13-May-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 19 residues -Click on image for an interactive view with Cn3D
Feature 1:retinoid binding site [chemical binding site]
Evidence:
  • Structure:2G78; Homo sapiens CRABP2 ( R132K:Y134F mutant) with bound all trans retinoic acid, contacts at 4A
  • Structure:2CBS; Homo sapiens CRABP2 with bound synthetic retinoic acid (Ro-13 6307), contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  #   #    #   #  ##   #  #              # # ##                ##    
1XCA_B      2 NFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPC 81  human
2G78_A      2 NFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPC 81  human
2CBS_A      2 NFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPC 81  human
AFJ51148    3 NFTGNWKMLSSENFEELLKALGVNVMLRKIAVAAASKPAVEIKQEGSSFYIKTSTTVRTTEIHFEIGEEFEEQTVDGRPC 82  eastern diamondbac...
P50568      3 NFSGHWKMKQSENFEEMLKALGVNLMLRKIAVAAASKPAVEIKQEGETFYIKTSTTVRTTEINFKIGEEFDEQTVDGRPC 82  African clawed frog
Feature 1                                  #         # #        # #   
1XCA_B     82 KSLVKWESeNKMVCEQKLLKGEGPKTSWTMELTNDGELILTMTADDVVCTRVYVRE 137 human
2G78_A     82 KSLVKWESeNKMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTKVFVRE 137 human
2CBS_A     82 KSLVKWESeNKMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTRVYVRE 137 human
AFJ51148   83 KSLAKWENnNKIVCEQKLLKGEGPQTSWSRELTNDGELILTMKADDVICTRIYVRE 138 eastern diamondback rattlesnake
P50568     83 KSLAKWVSeNKMACEQKLLKGDGPKTAWTREMTNDGELILTMTADDVVCTRIYIRD 138 African clawed frog

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