3OV9,4J4X


Conserved Protein Domain Family
Tenui_N
?
pfam05733: Tenui_N 
Click on image for an interactive view with Cn3D
Tenuivirus/Phlebovirus nucleocapsid protein
This family consists of several Tenuivirus and Phlebovirus nucleocapsid proteins. These are ssRNA viruses. In crystal structures the nucleocapsid protein from the Rift Valley fever virus (RVFV) displays a ring-shaped oligomeric assembly. Electron microscopy (EM) also demonstrates that, in complex with RNA, the RVFV nucleocapsid protein forms rings in solution.
Links
?
Statistics
?
PSSM-Id: 368585
Aligned: 14 rows
Threshold Bit Score: 246.103
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
3OV9_A     3 NYQELRVQFAAQAVD-----RNEIEQWVREFAYQGFDARRVI-EL--LKQYG---GADWEKDAKKMIVLALTRG-----N 66 
ABQ23524   3 DYARIAVEFSGEAVN-----LAEIQGWVADFAYQGFDARRIV-EL--VQQKG---GATWKDDVKMMIVLCLTRG-----N 66 
ABQ23528   3 DYAEIAVAFAGEPVN-----NAEVMGWVNEFAYEGFSAQRII-QL--VQERG---PQTWQTDVKMMIVLALTRG-----N 66 
ABQ23538   3 EYQKIAVEFGEQAID-----EAVIQDWLQAFAYQGFDARTII-QN--LVQLG---GKSWEEDAKKMIILSLTRG-----N 66 
P22025     6 NWVRFAIEISDAQWE-----EEEIREFINLFQYQGFDAAVVLsRIfeLAKKAdlsRDQMLRDIRALITLHLTRG-----N 75  Uukuniemi virus S23
Q7TBL7     7 EIQAEIERVSTLALKyitehKDILVAFAGQIDYNGYDAGKLL-KI--LQDKSk--NRDFGKDLCHLLVMRYTRGtgfvrD 81  Iranian wheat strip...
O11440     7 DVQTEIERVTALALKyitdhKDTLVTFVGQIEYNGYDAGKLL-QI--LKKKAe--GRDFGKDLCYLLVMRYTRGtgfvrD 81  Urochloa hoja blanc...
P84254     6 EIQNEIERVTALAVKyisenKDSLVVFVGQIDYNGYDAGKLL-SI--LKEKAk--GRDFGRDLCYLLVMRYTRGtgfvrD 80  Wheat yellow head v...
Q50HQ8    11 DLQKAINDISKDALKyltdnKASVTTFHDQIGYAGYDAATLI-GI--LKDKG---GATLAQDVVKMIVMRYVRGtgfvkD 84  Maize stripe tenuiv...
Q9J0Y6    11 DLQKAINDISKDALSyltahKADVVTFAGQIEYAGYDAATLI-GI--LKDKG---GDTLAKDMTMCITMRYVRGtdfvrD 84  Rice stripe tenuivirus

3OV9_A    67 KPRRMMMKMSKEGKATVEALINKYKLKE--GNPSRDELTLSRVAAALAGWTCQALVVLS--EWLPVTGTTMDGL-SPAYP 141
ABQ23524  67 KPTKMVEKMSPEGKVKVNRLISTYGLKS--GNPGRDDITLSRVAAAFAGWTCQALNVLH--PHLPVSGTTMDAI-SPNYP 141
ABQ23528  67 KPAKMIEKMSAEGKKKATRLITMYNLKS--GNPGRDDLTLSRVASAFAGWTCQALAVLH--PYLPVTGASMDSI-SPGYP 141
ABQ23538  67 KPKKMVERMSPEGAREVKSLVAKYKIVE--GRPGRNGITLSRVAAALAGWTVQAVEVVE--NFLPVPGSTMDRMcGQTYP 142
P22025    76 KLSSIEKRLSEEGKKEFALLKARYQLVDkaKEAA--DLTLSRIAIANAGLTCRILPQVV--AHTAVTRSRMESL-SADYP 150 Uukuniemi virus S23
Q7TBL7    82 VRKKI---KVAAGGETSHEIVTHYGIVQsvGDNA-DAITLGRLAALFPNVSMTIVKSVStgAKLAIDSADMGTS-GIDIL 156 Iranian wheat strip...
O11440    82 VRKKI---KTAAGGDTAHEIVTHYGVVHsvGDNA-DAITLGRLASLFPAVSMNIVRNVStgAKLAVDSSDLGSS-GLDLL 156 Urochloa hoja blanc...
P84254    81 VRKKI---KVAAGADTAYEIVTHYGVVQsvGDNA-DAITLGRLAALFPYVSMNIVKSVStgAKLALDTSDLGTS-GLDIL 155 Wheat yellow head v...
Q50HQ8    85 VTKKT---KATAGSEEAAALVARYGLVSsvGSNA-NAITLGRVAQLFPNVSYEVTKQFTg-LKMAIDSSDLSMS-GTDSL 158 Maize stripe tenuiv...
Q9J0Y6    85 VTKKV---KVAAGSTEASTLVSRYGIVSsvGTNA-NAITLGRLAQLFPNVSHEVVRQISg-VKMAVDSSDLGLT-GCDNL 158 Rice stripe tenuivirus

3OV9_A   142 RHMMHPSFAGMVDPSLP----GDYLRAILDAHSLYLLQFSRVINPNLRGRTKE-----EVAATFTQPMNAAVNSNFISHE 212
ABQ23524 142 RAMMHPCFAGLVDPTIP----AEYCQMIVDAMSVFLIQFSRTINKSLRGQPKE-----AVVESFVQPMQAAMASSFITPA 212
ABQ23528 142 RAMMHPSFAGLIDNSIP----EAFLQTVVDAHALYLLQFSRVINKNMRGQPKS-----VVVSSFLQPMNAAIVSGFISHD 212
ABQ23538 143 RQMMHPSFAGLIDPSLD----QEDFNAVLDAHKLFLLMFSKTINISLRGAQKR-----DIEESFSQPMLAAINSSFIDNT 213
P22025   151 VCMMHNAFAGLIDETLP----EDSIKALVDAHRLYLLEFSRTINVKHRGMEAK-----EILDANDSALQAGLASSFLTPS 221 Uukuniemi virus S23
Q7TBL7   157 LWDFVPQFISLDSETAPfcnkKNANNVLLSLQILQGALTTKKTMPDQKKKLRNlitdyDFVKYTSELMVITCSAKNLTDE 236 Iranian wheat strip...
O11440   157 LWDFVPQFITLDSVTAPycsgKGMNIILFSLHVLHGALTTKKTMPDQKKKARNlvtdfELVKYTTELLVITCNAKNLKAE 236 Urochloa hoja blanc...
P84254   156 LWDFVPQFINLDSVDAPycnkKNTSNILFSLHLLQGALTTRKTMPDQKKKKDNlttdfDLLKYTAELLVITCSAKNLTDN 235 Wheat yellow head v...
Q50HQ8   159 LWDFVPQYITLDSSSAPycttKSVNHILFSIHVIHAFLVTKKTMPETKKKERGllkdiDMIKYTTGLLVITCQSKNLNEA 238 Maize stripe tenuiv...
Q9J0Y6   159 LWDYVPQYIKLESETAPycttHSLSHILFVVHIIHSFQITKKTMPEGKKKERGltkdiDMMKYTTGLLVITCKSKNLADK 238 Rice stripe tenuivirus

3OV9_A   213 K----RREFLKAFGL 223
ABQ23524 213 E----RRKLMIALGI 223
ABQ23528 213 K----RRKMLMAFGI 223
ABQ23538 214 Q----RRAFLTKFGI 224
P22025   222 Q----KRAYLLSFKL 232 Uukuniemi virus S23
Q7TBL7   237 KkqtyRRKLVSAFQT 251 Iranian wheat stripe tenuivirus
O11440   237 KktsyRESLMRPFQE 251 Urochloa hoja blanca tenuivirus
P84254   236 KkstyRKKLVEPFRE 250 Wheat yellow head virus
Q50HQ8   239 KkksgRTKVCEPYYV 253 Maize stripe tenuivirus
Q9J0Y6   239 KkedgRKKVLDEFIT 253 Rice stripe tenuivirus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap