5UK4


Conserved Protein Domain Family
Rhabdo_ncap
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pfam00945: Rhabdo_ncap 
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Rhabdovirus nucleocapsid protein
The Nucleocapsid (N) Protein is said to have a "tight" structure. The carboxyl end of the N-terminal domain possesses an RNA binding domain. Sequence alignments show 2 regions of reasonable conservation, approx. 64-103 and 201-329. A whole functional protein is required for encapsidation to take place.
Links
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Statistics
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PSSM-Id: 395755
Aligned: 3 rows
Threshold Bit Score: 648.144
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
5UK4_O  11 NTVIVPKLPANEDPVEYPADYFRKS-KEIPLYINTTk--SLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKD 87  Vesicular stomatitis ...
A4UHQ3  12 NQLVSVKPEVIVDQYEYKYPAIKDRkKPSITLGKAP---DLNRAYKSILSGINAARLDPDDVCSYLAAAMALFEGICPDD 88  European bat lyssavir...
Q65474   7 KKEIKAVKPTDAIPPQYPKEFFINGnGKKPTLRVPQgklDLPTVRELVFGGLERGELVLSHVIRYLYLVGERITEKLEGD 86  Bovine ephemeral feve...

5UK4_O  88 WSSFGINIGKAGDTIGIFDLVSLKALDGV---LPDGVSDASRTS--ADDKWLPLYLLGLYRVGRTQMP---EYRKKLMDG 159 Vesicular stomatitis ...
A4UHQ3  89 WESYGILIARKGDKITPANLVNIQRTDVEgnwALAGGLDVIKDPttAEHASLVGLLLCLYRLSKVSGQntgNYKTNVADR 168 European bat lyssavir...
Q65474  87 WISFGVNIGRRNQEINVWNFYEVIIEDDQ---TIDGRRANNVDE--NDDVWLTLALLAYYRLGRSANQ---NHRNNLLIK 158 Bovine ephemeral feve...

5UK4_O 160 LTNQCKMI---NEQFEPLVPEgRDIFDVWGNDSNYTKIVAAVDMFFHMFKkHECASFRYGTIVSRFKDCAALATFGHLCK 236 Vesicular stomatitis ...
A4UHQ3 169 MEQIFETApfvKIVEHHTLMTtHKMCANWSTIPNFRFLAGTYDMFFSRIE-HLYSAIRVGTVVTAYEDCSGLVSFTGFIR 247 European bat lyssavir...
Q65474 159 LNAQIKGY---RKDAPNIIDD-VAVHGSWVTNSEFCKIAAGFDMFMNRFKnNKYAHVRFGTVASRYKDAAGLMALGHACD 234 Bovine ephemeral feve...

5UK4_O 237 ITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWGQLTALLLRSTRARNA 316 Vesicular stomatitis ...
A4UHQ3 248 QINLTAKEAILYFFHKNFEEEIKRMFEPGQETAVPHSYFIHFRSLGLSGKSPYSSNAVGHVFNLIHFVGSYMGQVRSLNA 327 European bat lyssavir...
Q65474 235 VTGLTIGEILDWIFVSNVGEDVVKIMEEGNEIDDPYSYMPYMMDMGISNKSPYSSISCPHIYTFLHLVGTLLTSERSKHA 314 Bovine ephemeral feve...

5UK4_O 317 RQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAP-------------PQGRDVVEWLGWFE 383 Vesicular stomatitis ...
A4UHQ3 328 TVIATCAPHEMSVLGGYLGEEFFGKGTFERRFFRDERELAEHEAIESTKTDVAladdgtvnsddeeLYSGGTRTPEAVYT 407 European bat lyssavir...
Q65474 315 RMVSEHNLQNIKMNAFVVSYVKSNKAALTKAFLKSEDRDYEKRQEDGSNDDEDedesgddddfgamPKSSDPMEWFIFLE 394 Bovine ephemeral feve...

5UK4_O 384 DQNRKPTPDMMQYAKRAVMSL 404 Vesicular stomatitis Indiana virus strain San Juan
A4UHQ3 408 RIMVNGGKLKKSHIKRYVSVS 428 European bat lyssavirus 2 strain RV1333
Q65474 395 SNHFILPEKVTEFCIRECKKI 415 Bovine ephemeral fever virus strain BB7721
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