Conserved Protein Domain Family
seadorna_RNAP

?
TIGR04234: seadorna_RNAP 
seadornavirus RNA-directed RNA polymerase
Members of this protein family are the seadornavirus VP1 protein, the RNA-directed RNA polymerase.
Statistics
?
PSSM-Id: 275072
Aligned: 4 rows
Threshold Bit Score: 1764.35
Created: 9-Oct-2014
Updated: 23-Jan-2015
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
NP_694468   64 IFLGTLINKLFRPQIDL----SKLKDERLLRCVEYDNGWYQLCVKIQRAIDNGLEIE-KADLPKYDPKFEYN-IKHPTRE 137  Kadipiro virus
AAQ83562    73 IWLGLLINRKLRPEDNL----SLITDPDLIALVEYSPAWYPFALRINQALDDGLNLNgNVEECSFDSRFINN-IKFPRPE 147  Liao ning virus
AAF77631    67 VKLGTLLNWTKAERLDTirheSRIKDERLRRLIDFDYGWIDYAVVLQRYLDEGNTIE-SANILQFDGDFVNN-IKHPTQK 144  Banna virus
Q698V5      73 IYLGSLVTRESNEYEDV-----SYSYDNLNTIYKDAPVWEPLLNKVSKWYDEGWSVP-SSKPIPYDPNYSKClILSPDKY 146  Eriocheir sinens...
NP_694468  138 NGFLNYYVLKECSVEIYMKDDNG--IPDPAILRGWDISTIPESIQLp---SGVVFNVRKACMRRINDEAPFYLYTSIFQY 212  Kadipiro virus
AAQ83562   148 NDFLGFKFIIEADTFVLLKDDLG--IEKPDVIRCWLIDTIPEEVEI----GGEIFKLRDEMVRRVADEAPLYAFCDIVKY 221  Liao ning virus
AAF77631   145 NNFLDIKVIKECETYILMKDDNG--IRDPDILRAWELSSIPEVIELdvdgETKKFNLRKEMIKRIQDEAPVYFFCNPYRY 222  Banna virus
Q698V5     147 KKYHKVVVDVDYDAFHWSIDVNSefMDMPNVIRAWDISTIPQFVDG--------FPMLKHLIDRSKKEALFYFNYRLIPY 218  Eriocheir sinens...
NP_694468  213 AATRIDMDDPYTRIWLKYFIGAEDFFSYNGRVIECDKSLLAHKRFEMMIAAQRAALKY-DMVGNDIfkECMLEAFENIIR 291  Kadipiro virus
AAQ83562   222 CLTEVDFNNTVIKQWLNYFVRKRDFFRFNGKDMVCSSSLIAHKRFEVALSHQRCHSKFtKLDEEGF--ECLTEGALYIMP 299  Liao ning virus
AAF77631   223 AVANLDPNIPEVRLWLEYFIGSEDFFGFNGPNVIVSKSLLAAKRFEVVVNHLRKVAAF-ELDAESK--EVMNKWIKYIMI 299  Banna virus
Q698V5     219 VVHNIDKDDDMWREWLSYFLHG-DHFKPDRGSYDNFGSLLGHKRLEVALMYHNRIRLM-PMSATAL--DAMNEGAKFLMK 294  Eriocheir sinens...
NP_694468  292 DPIYNSYRLRGAFGDLNQHVFARTDSPALNISMVGVESTS--FRMREGTGITDS-DSRINLIDGESFEASLQTLRDYGLS 368  Kadipiro virus
AAQ83562   300 DPIFRSHMLRSPFGDLNQHVFARTVGPSIVWSRSDIESTN--FTLSLEPVPVDYsQDRFNYVDSENTREVVEGLRMMGMP 377  Liao ning virus
AAF77631   300 DPVYRSYKNRGAFGNLNQHVFARTKSEGLSWSLIDIGTTN--FELKPTKKVAGSyVNKFNLVDDVLVEESLKDLRNEGLH 377  Banna virus
Q698V5     295 DPTYHTAVMKKYNGVLTQYGMAEPLGYNRGWGYTGVTTADspFILSNVNGADGY-----TVIDREAVEEA-KEIGMQYTP 368  Eriocheir sinens...
NP_694468  369 KNADLLQRAVRFPINRVNCKLGFLNRMVLGLCGYTGSHGNSAVVKQFTGTRDMGPNVTKEFYDEVVNEVFLTYKSALQ-- 446  Kadipiro virus
AAQ83562   378 KNARLLHNLQTANINPTNMLKGKVNRMILAMCGYTGTHAATALVNQFKGTSDMGEAVTDTFATRVADNMFDYINIGFA-- 455  Liao ning virus
AAF77631   378 KMADVTRRMIDADITPENVKKGKLNRLALSYCGYTGSHSATAMVKQFNGTKDLDPNCDPMFVDIVKDNMRVYMQEGLQky 457  Banna virus
Q698V5     369 KLVKLQLANMTKTSSPVNLIDSLIGNAIISLTGFAGSEKVSTALDQFE-KENFERKVPDELFTAISNVTYEMVRESFQpl 447  Eriocheir sinens...
NP_694468  447 MGDFVEPQYRLDVLMKGGTSSASSTFNHHKIKARIRYNSPFFTDDDLDSKSdkVVKT-VDGKYrIITEVATTLKSKSATI 525  Kadipiro virus
AAQ83562   456 KDGIKDISATPDILFKGGTSSASSTNTFKSISGPVKYYSPFLMDEDVDNKT--VFDTsGPKKL-VLTRISHKLRSKNANI 532  Liao ning virus
AAF77631   458 PQGSR-KSNRLDILFKGGTSSASSTNEHAVVNGRFRYRSELYRERDVNSST--VFKTaTPGQYrVVKKISAKLKSKNANI 534  Banna virus
Q698V5     448 ERSMLDKRTRLLRLYNAGTSASSSAPP----GARYIFNKKMIMYSTFLSKSidVTDEyAPMSF----ITSLNFNNKTANI 519  Eriocheir sinens...
NP_694468  526 LTHPEDFIYAS-DDMLKCRVKMGSRLVRGTRDKRIITPNYGSTYFSMLLSSLSAVRLLSSRIPNMPALSVSGRIGTTYEG 604  Kadipiro virus
AAQ83562   533 ITNPENFLNFN-ADALDEVVNAGSRLVRGTRAKRIITPNYGSIYANSLCTVLPAVRLLSNRPKNTLASTLEGIVGTTYTG 611  Liao ning virus
AAF77631   535 VTHPMNFINFK-VDDLDIVVNAGSRLVRGTRAKRIITPNYGTIYAASLMTVLPAVRLLSSRASNMGALSTQGRIGTTYHG 613  Banna virus
Q698V5     520 LTHPQNYYMYDwHDNHNRIINSGSREVRGGRATRIITPDPPSNYMLLILGALNTVRDMGSHRTGFSNLGMNEVVGSSFLD 599  Eriocheir sinens...
NP_694468  605 ALPHVVMAPMMAALSGST-KYAAVALDFSQYDSSLHGDISKAHAEGLRKYASLYPKGSNYDDAEIVDLTKVSpNKFCdIT 683  Kadipiro virus
AAQ83562   612 ALPHDVMAPFMCATTNDP-SYFAAAFDFAQFDSSQYGRISDAHADGVRRFADKFTGDDVNDAKGRLDFMSLR-SKFI-IQ 688  Liao ning virus
AAF77631   614 ALPHDVMAPQLAVTSSDDvSKICVAKDFGQFDTSQWGQISKAHADGVRSMKAHYSMG--HDTLVDLDLNDASfADLLeVT 691  Banna virus
Q698V5     600 AVSHDALAPQCLATSSSR-SLCAQALDYSTWDRQQGGRIAEAKAHGIMRVANELFPNTNTNLSDVHNLLELPmSSILyLW 678  Eriocheir sinens...
NP_694468  684 AKNYETPLEYESVGIVAEAAGVKSGELTTQLRNTDPNKAHTTLTLKRYNSKYVR----KMDLVHENIVGDDKYVILVMTD 759  Kadipiro virus
AAQ83562   689 SESYRRPLKYKSKGIIAEASGVKSGELTTQLRNTATNKGHTDEVLIKFNQLSRR----KIRIKSENIIGDDKNIVFSLED 764  Liao ning virus
AAF77631   692 AMSYERPLKYKMNGLVCESAGVKSGELTTQTRNTTTNISHSTVALDDYNNRAYRlnlpKLELVTDNKVGDDSVEVLRVVD 771  Banna virus
Q698V5     679 SESIKSSYKYKIDHSTVAVDAVRSGELTTQFSNHVTNLAALRQYHETYNRTKVPqgfrPIEVAQINIVGDDVNVILRTAD 758  Eriocheir sinens...
NP_694468  760 GKPVTKLDLKRFIDCAVDVAAENHLVISGKRSVAGNIKGEHIKIWVIKGYITQDVFLDSLVSEKISFREMKYVDKLTTIY 839  Kadipiro virus
AAQ83562   765 GRPLDSTTAKLLIEVARDVAQENHMELSAKRTVVGNCVTEHIKIFVARGFIMQDVFLDSFASEKNSLRAMSYADRLNTIY 844  Liao ning virus
AAF77631   772 SSPLTPEIAKLYVNCMQDHADKNHLEISAKRTIVGNNVAEHIKIWVFKGYLALDVFLDSVTSEKNSFSNLNYLEQVNILY 851  Banna virus
Q698V5     759 RKPFTLRDMEGYHNHTFEKAAEYEFSISKKRSMMSNVATEHIKQYFKMGDILLDVMLSSMTSERNTFREQGYMNGINLLY 838  Eriocheir sinens...
NP_694468  840 DIFMSMLTRFATTGPLMELFMRDIILIEGV--KMG--YLNFIPTVKLISAVGGPEMCPSAPELRGMAR---YMHDYDKDK 912  Kadipiro virus
AAQ83562   845 DIFMTMLIRFAQAKPLMDLMVNDMCLMDGL--KSG--RVTFIPTLGTLFAIGGPEMLVGAPEIRGMAR---FMHRFDNEY 917  Liao ning virus
AAF77631   852 DMAMTLMIRYCSVQACMTQFCNDMKLLNGI--RAG--NYTFIPTPKIICAYGTPEICLRAPEIRSFGR---YL-PIDEDE 923  Banna virus
Q698V5     839 DIAVTIMARYAQNDKLFEDMMANLPFMEGVvyRHGsqKYHFHPSPCHLLGSGSPEILPSAIDLRTFARvitVLGDYESDL 918  Eriocheir sinens...
NP_694468  913 FDTINRLFATLRERNGTEAFRRQILRQVredeivkNEPLVSPLWRIHFRRRNGIIVdNDLVADTFNDIKKFMPEHVDIKL 992  Kadipiro virus
AAQ83562   918 FSVMNDLYATLRDNSGGKKFIDDLTGSA-------TDDLVNDFWVKHFKRKNDYDVsLDTRITNKRQLQNLIPENCRVRL 990  Liao ning virus
AAF77631   924 YSVLNELVASLSTNKPKMDFVAQMFEQ--------NGNQVHGIWLDHFKRKNDVNP-DGGGIHISEGLKRLMPEYCERHL 994  Banna virus
Q698V5     919 YEAMSSLNATLLSTSGTTQFESQVRKHLse---elGDNIISPVWSEVFYR-------DEVGYEMVTKHNKLTPEGHREYL 988  Eriocheir sinens...
NP_694468  993 TEDLISTLKEPVAGRMDDNVILINLFTvGKLGK----YDRPKFKY-KFFLT------EYKTTGVESPYLGACEGVRMVHK 1061 Kadipiro virus
AAQ83562   991 LKMVLDTVKEPVIQIMNDTMSLVNIIQrGKLTK----YSKPKYHYvNWFIR------PYNGVKYVSPYLAADDGVRNVHT 1060 Liao ning virus
AAF77631   995 NELVYKTLDDKVIRDYTSDIIITNICK-GKLSK----APKLAF-FaNFYLS------LTGFNGVDSPYLTADEGVRNVHR 1062 Banna virus
Q698V5     989 VDRIISTLSNREKLIMNNADIIEKLLS-GKLKKvkryFQEIKFKMsNMPITglpdrkIEGVSELSSPYRAADVGMRRVHK 1067 Eriocheir sinens...
NP_694468 1062 IVGLADANVKVLNPAARLSALLRSRPGTHPAYLSGEDIFGVLSSrvNAQQTWVTVLELLDFSASVIPDVIDFCSKNMHRY 1141 Kadipiro virus
AAQ83562  1061 VVGLAERNTSIPESVEPINRLLRKYPHMHPSYIGGIDILSALSE--VDSGMWRDCLLALDFREDIIQPLLVLVDNVMFRY 1138 Liao ning virus
AAF77631  1063 VIGLSYRNTLSTSPTANVDRILRNNPGSAPAYLTGNDILGVLSD--YPYQNWRTVVELLDITEPSATAIIEVATNQMHAY 1140 Banna virus
Q698V5    1068 CIGLSRRNLKFPSVTERLSRLLKSYGLVTQA--DSAKILSAAAGlgRSSTRYRNLGTDLGLSDMHASSFAQRLPALLTQY 1145 Eriocheir sinens...
NP_694468 1142 LTDKNVNLTAIFDNTSRTYDVSAEMIKQRVKISGSE---RAGMvlTRGLGLEGMKYMLYMARRGRSVKAS 1208 Kadipiro virus
AAQ83562  1139 LHERNVTSTSLYDNTSRTYDVSDSNLNKLVHVAPSN---SNKQ--SLGWRFEGMKVVLYMARYGHMVSVS 1203 Liao ning virus
AAF77631  1141 LADKDLNTANLFDNTSRTYDISDRTYPKFVNITSNL---SNSN--RRGFQLEAMKHVIYMARRGIATLAN 1205 Banna virus
Q698V5    1146 EIENASGSFTFYDTVSRTYDVSEASMNERVGDVSNNpiaRANSstSTYYRFRGMLHCLYGARFGLSLHAS 1215 Eriocheir sinensis reoviru...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap