3WRX


Conserved Protein Domain Family
Viral_helicase1

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pfam01443: Viral_helicase1 
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Viral (Superfamily 1) RNA helicase
Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Statistics
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PSSM-Id: 366646
Aligned: 73 rows
Threshold Bit Score: 105.539
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3WRX_C 164 VLVDGVPGCGKTKEILSRVnFeedlilvpGRQaAEMIRRRAnasgiIVATKDNVRTVDSFLMNYGKGarcQFKRLFIDEG 243
P37988  24 IVVHCMPGAGKSSCIRALLkA--------DSR-FVAYTLGV-----PDPCNLDGLCIKAFTGSVd-----LKYFNILDEY 84  Chrysanthemum virus B
P17526  24 IVVHCVPGAGKSSLIRELLeL--------DSR-FCAYTAGV-----EDQPRLSGNWIRKWSGQQp-----EGKFVVLDEY 84  Potato virus M (strai...
P16650  24 IVVHSVPGAGKSSAIRELLkL--------DSR-FECITRGR-----PDIPNLEGAFIKAERSg-------ESKLLLVDEY 82  Potato virus S (strai...
Q83086  24 IVVHSVPGGGKSSLIRKLInK--------DRR-FSAYTFGL-----EDCESITGVRIKKAHACIp-----RSEFVVFDEY 84  Lily symptomless virus
Q67552  24 KVVLGVPGCGKSSCIRKLInL--------DSR-FIAATFGA-----PDPLNVTGRRIHSVGELAKIDc--TGKFLLLDEF 87  Garlic latent virus
Q67655  24 KVVLGVPGCGKSRLHRKLInQ--------DSR-FIAPTFGA-----PDPLNVTGRRIRAVSELDTFDr--TGKFLLLDEF 87  Garlic latent virus
O91633  24 IVVHGVPGCGKSTLVRKFLdL----------EdFHAQTFGV-----SKPTNLSGRGVEKAPVPLQSG------FNILDEY 82  Cherry green ring mot...
Q64963  24 IVVHAVPGSGKTTLIKQALiR---------NNnIEAVTFGV-----PEKANIHGTYIKKARQGQRGR----GNYSILDEY 85  Apple stem pitting vi...
O91902  24 VVIHSVPGSGKSSLIRELIsE--------DEN-FIAFTAGV-----PDSPNLTGRYIKPYSPG--CAv--PGKVNILDEY 85  Grapevine rupestris s...
3WRX_C 244 LMLHtgcvnflvemSLCDIAYVYGDTQQIPYInrvtgfPYPAHFAKLevDEVETRRTTLRCPADVTHFLNQRYEGhVMCT 323
P37988  85 ARYNg---------DASDFFALFGDPVQSPPRn----lYRAHFKAVL--SKRFGSCTAQLLRELGFEVESTK--E-DLVS 146 Chrysanthemum virus B
P17526  85 TLLT----------EVPPVFALFGDPIQSNTSa----vQRADFVCSV--SRRFGSATCGLLRELGWNVRSEK--A-DLVQ 145 Potato virus M (strai...
P16650  83 IEGP----------IPEDAFAIFADPLQSTAVs----pHRAHFIKTL--SHRFGKCTDSLLRDLGWDVQAEG--Q-DSVQ 143 Potato virus S (strai...
Q83086  85 IEGD----------APPWAFAVFADPLQGGPGp----fLRAHFIKRR--SHRFGKCTAQLLNDLSYEVESDL--A-DVVQ 145 Lily symptomless virus
Q67552  88 QQGGf---------EELKPFALFGDVCQFFDSdr--pcPIADWCKTL--SHRVNKPTCDFLREFGFEITSSK--E-GTLV 151 Garlic latent virus
Q67655  88 QQGDf---------EGLKPCPLW-HVCQFFDSar--pyPIADWYKTL--SHRVNKTTCDFLRNFGFEITSSV--Q-GNLT 150 Garlic latent virus
O91633  83 LSGP----------YSEGFDLFLSDPYQNFRKp-----LTAHYINSC--THRFGPSVCQFLNKLGFEIESAKEED-TELI 144 Cherry green ring mot...
Q64963  86 LSGe----------YSTGFNCLFSDPYQN--Hgd---cLRAHFIGRC--SHRFGRQTVQILRDLGYNIASSK--E-DIVE 145 Apple stem pitting vi...
O91902  86 LSVQ----------DFSGFDVLFSDPYQNISIp-----KEAHFIKSK--TCRFGVNTCKYLSSFGFKVSSDG--L-DKVI 145 Grapevine rupestris s...
3WRX_C 324 SSEKksvsqemVsgAASINPVskplKGKILTFTQSDKEaLLSRgyadVHTVHEVQGETYADVSLVRLtpTPvsIIARDSP 403
P37988 147 IRGL-------Y--DFDPVGT----VIYYEKEIGCLLRaHSIE----AYEPEEVVGKTFETVTFVTAe-NH--IPAESRH 206 Chrysanthemum virus B
P17526 146 VSDI-------Y--TKDPLGK----VVFSEEEVGCLLRsHGVE----ALSLQEITGQTFEVVTFVTSe-N---SPVINRA 204 Potato virus M (strai...
P16650 144 IADI-------F--TVDPRET----IVYFEPEVGELLRsHGVE----ASCIGEVRGATFEHVTFVTSe-N---SPLIDKA 202 Potato virus S (strai...
Q83086 146 IQGL-------Y--ETDLQGT----VVYYEACVGNLLRaHSVP----AYCISEIRGQTFESVTFVTSe-N---YP-VDRA 203 Lily symptomless virus
Q67552 152 FGGL-------Y--EEELLGV----VITYCSQVSNLLKaHQVD----HFTLASCRGSEFPKVCLCLSd-SI--IQREDLA 211 Garlic latent virus
Q67655 151 FGGL-------Y--EEELQGV----VITYCTQVSALVEsHRVE----HYKLADCRGSEFNNVSLCLSd-SV--VHSEDLA 210 Garlic latent virus
O91633 145 FGKV-------Fg--GTIRGE----IICFEKEIEELLRsHSAS----FHHPCDLRGAEFDDVTFISAhtDLqeIVG---P 204 Cherry green ring mot...
Q64963 146 KKNI-------Fq-LIEPEGV----IICLEKGVEDFLKwHSVE----YKFPCQVRGATFDIVTFIHEkpLEelVG----P 205 Apple stem pitting vi...
O91902 146 VGSP-------F--TLDVEGV----LICFGKEAVDLAVaHNSE----FKLPCEVRGSTFNVVTLLKSr-DP--TP-EDRH 204 Grapevine rupestris s...
3WRX_C 404 HVLVSLSRHTKSLKYYT 420
P37988 207 LVYQCLTRHRSVLHLMT 223 Chrysanthemum virus B
P17526 205 AAYQCMTRHRTALHILC 221 Potato virus M (strain Russian)
P16650 203 SAFQCLTRHTKSLLILC 219 Potato virus S (strain Peruvian)
Q83086 204 LAFQCLTRHRSSLLILS 220 Lily symptomless virus
Q67552 212 KFYVCATRSRGDLLILT 228 Garlic latent virus
Q67655 211 KFYVCATRSRGDLLILT 227 Garlic latent virus
O91633 205 DLYVALTRAKKSLTILQ 221 Cherry green ring mottle virus
Q64963 206 DLFVALTRHRSKLVLVS 222 Apple stem pitting virus PA66
O91902 205 WFYIAATRHREKLIIMQ 221 Grapevine rupestris stem pitting-associated virus 1
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