Conserved Protein Domain Family
LOB
?
pfam03195: LOB 
Lateral organ boundaries (LOB) domain
The lateral organ boundaries (LOB) gene encodes a plant-specific protein of unknown function that is expressed at the adaxial base of initiating lateral organs. The N-terminal of the LOB protein contains an approximately 100-amino acid conserved domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins as well as in proteins from a variety of other plant species. The LOB domain contains conserved blocks of amino acids that identify the LOB domain (LBD) gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is the defining feature of the LOB domain, is present in all LBD proteins.
Links
?
Statistics
?
PSSM-Id: 460843
Aligned: 147 rows
Threshold Bit Score: 106.424
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
WGS:AAAA:OsI_03908  38 PCGACKFLRRRCVPGCVFAPHF-----SGcggsgvgagvggrgreRGAAEFAAVHRVFGASNVAKLLSRV-PAALRRDAA 111
XP_009405108         2 SCNGCRVLRKGCSRACVLRPCLrwidtAE----------------AQGHATAFVARFFGRAAFMSLLSAVp-DSQRPALF 64 
XP_003562786        12 SCNGCRVLRKGCNEACVLRPCLhwieaAE----------------SQGHATVFVAKFFGRAGLLSFLTAVp-EPQRPAVF 74 
EMS63953             2 SCNGCRVLRKGCSDACVLRPSIewidgAQ----------------PQANATVFVAKFFGRAGLVASLAAVp-LHHRPALF 64 
XP_009397285         2 SCNGCRVLRRGCSATCILRPCIqcidgAG----------------AQAHATAFVAKFFGRSTLLSFLSSVp-LPRRPAAF 64 
XP_006346321         2 SCNGCRILRKGCNENCILRQSLqgiesPH----------------AQANATVFVAKFFGRAGLMSFLTSVs-ESQRPALF 64 
XP_002527499         2 SCNGCRILRKGCSEDCMLRHCLqfidnPQ----------------AQANATVFVAKFFGRAGLMSFISSVp-YNQRPSLF 64 
XP_003535688         2 SCNGCRVLRKGCSDDCMLRHCLlwienPQ----------------AQAHATLFVTKFFGRATLMSFLSTVp-PNQRSALF 64 
XP_006341223         9 KCAPCKYQNNICDENCPLAPFF-----PS----------------NKVDEFDKVIRLYSIDTLINMLNSVtANEKKAKMA 67 
XP_002875413         5 PCRFCRLQNKQCVNDCMFSPLF-----PS----------------NNLRKFTIMNFVFGHKTLTFFLKDL-SPMDRKYTT 62 

WGS:AAAA:OsI_03908 112 RTVCYEAQARIADPVYGSVGTILALQHQVSLLQGQLSVLES 152
XP_009405108        65 QSLLFEACGRTINPVGGAVGLLCTGNWHLCQAAVNAVLNgd 105
XP_003562786        75 QSLLYEAAGRTINPVSGAVGLLWSGSWQLCEAAVQTVLRgg 115
EMS63953            65 RSLLYEACGRTINPVSGAIGLMWTSNWDLCQAAAEAVLRGD 105
XP_009397285        65 RSLLYEACGRTINPVTGATGLLWTGNWHLCQAAVATvlggg 105
XP_006346321        65 QSLLFEACGRTVNPVHGAVGLLWTGNWHVCQSAVETVLKgg 105
XP_002527499        65 QSLLYEAVGRAVNPVSGAVGLLWTGNWHVCQKAVMTvlrgg 105
XP_003535688        65 ESLLYEAVGRTINPVNGAVGLLWTGNWHLCQMGVEKVLrgg 105
XP_006341223        68 ETLILEAKIRYENPVYGSLAVIEKLNLEIEETQKELDLVQK 108
XP_002875413        63 RTLYFEAKSWFFGPSKDPSDFLNAVINYANQTLAELSKTKK 103
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap