Conserved Protein Domain Family
VQ
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pfam05678: VQ 
VQ motif
This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Swiss:Q9LDH1. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors (Bateman A pers. obs.).
Links
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Statistics
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PSSM-Id: 461711
Aligned: 92 rows
Threshold Bit Score: 36.2088
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
XP_010664970  54 TVSPKIIHTQPSEFMTLVQRLTGLSSSS 81 
O23660        33 MYETTFIRTDPSSFKQVVQLLTGIPKNP 60  thale cress
XP_002300429  13 IINTQYVETDVRSFKSVVQEFTGKDSAP 40 
XP_002316791  13 IINTEYVQTDASSFKSVVQKLTGKDSAP 40 
XP_015688541  15 FIETQFVTSDAAGFKSLVQRLTGNDATA 42 
EER88443      21 FIETQFISSDAASFKAVVQRLTGKSPAP 48 
XP_018479365  13 FINTQYVQTDARSFKTVVQELTGKNAIV 40 
XP_006348408  10 IINTQYIETDASSFKSVVQKLTGKNSTV 37 
XP_019071439  10 IINTEYIQTDVSSFKSVVQKFTGKNSTS 37 
THU49945      14 vIVTKCVQADAVQFKSVVQCLTGKDSVV 41  Balbis banana
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