2IJG


Conserved Protein Domain Family
crypto_DASH

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TIGR02765: crypto_DASH 
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cryptochrome, DASH family
Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes. [Cellular processes, Adaptations to atypical conditions]
Statistics
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PSSM-Id: 274288
Aligned: 9 rows
Threshold Bit Score: 637.879
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2IJG_X          41 GVTILWFRNDLRVLDNDALYKAWSSSD-----TILPVYCLDPRLFHT----------------THFFNFPKTGALRGGFL 99  thale cress
AAF94962         4 KIGLYWFTNDLRVNDNPLLEQASQQVD-----RLICLYCYPSITPFL----------------ARYAQQTQWGEAKKRFL 62  Vibrio choler...
BAC61546         4 KIGLYWFTFDLRLHDNSLLVDASSFLD-----ELVCLYCRPSVTPFL----------------HHFAQEVTLGRARQKFI 62  Vibrio paraha...
uhmanoa:IL0122  15 RLGLFVFRNDLRVEDNLALYEAAQRSE-----TLICCFCFNPTQNKY----------------GHYG-IPAMGKHRFTFL 72  Idiomarina lo...
BAC88776         4 KTVLVWYRNDLRVHDHEPLTSALHKNA-----RVVALYCFDPRQFG-----------------KAPFGFEKTGPFRARFL 61  Gloeobacter v...
NP_991249        5 RTVICLLRNDLRLHDNEVFHWAQRNAE-----HIIPLYCFDPRHYQG----------------TYHYNFPKTGPFRLRFL 63  zebrafish
AAM26705        41 GVTILWFRNDLRVLDNDALYKAWSSSD-----TILPVYCLDPRLFHt----------------THFFNFPKTGALRGGFL 99  thale cress
AAU14279         4 TRVVIWFRNDLRLLDNACVARAATLASessdvEVVPVYVFDETYFK-----------------PSKRGLARFGAGRGKFT 66  Ostreococcus ...
CAE76612         5 KVVIYAMRRELRLSDNPIFHHLSNPESkhgfsHLLPVYVFPAQQIDLsgfvpkgsenphpapkSAVGGYARCGPYRAKFL 84  Neurospora cr...
2IJG_X         100 MECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFG-----ARTVFAHK-ETCSEEVDVERLVNQGLKRVGNStk---- 169 thale cress
AAF94962        63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVE-----ITDIYVDA-VAGSDERQAIARIHQDFSSVHIH------ 130 Vibrio choler...
BAC61546        63 DASLCELNDALGQLGQRLWTLDLPPYQALKYAIQYLS-----VTHLYSDA-MAGSDEQSILHKLQDEYPHLVIV------ 130 Vibrio paraha...
uhmanoa:IL0122  73 QQSLKQLRTELEMRGQKLIVLTGTFDRILTELISERQ-----VDAIFLSQ-HQGYYERLQLGLLQQRFPFLPFH------ 140 Idiomarina lo...
BAC88776        62 LESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELE-----IAAVHYHG-EVTSEELVVERDLQAALAPLNVPv----- 130 Gloeobacter v...
NP_991249       64 LDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGs----VSTVAFHE-EVASEEKSVEEKLKEICCQNKVRv----- 133 zebrafish
AAM26705       100 MECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFG-----ARTVFAHK-ETCSEEVDVERLVNQGLKRVGNstk---- 169 thale cress
AAU14279        67 LECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGAn----DRTIILTQtEVTSEETEMDVAVERATRERARGgaasat 142 Ostreococcus ...
CAE76612        85 AESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKakecqVGAVWMTS-HEGSEEKSEEKTVASFCAKSGIDf----- 158 Neurospora cr...
2IJG_X         170 leLIWGST--MYHKDDLPFD----VFDLPDVYTQFRKSVEAk-CSIRSSTRIPLS--LGPTPSvd-----dwGD-VP--T 232 thale cress
AAF94962       131 --QQALHS--LLSEPQLPFA----LEALPSTFTQFRKQVET--ISLSAPMGYPHV--LPPIEQ---------GWqLP--L 187 Vibrio choler...
BAC61546       131 --QHSVRS--LFDESKLPFT----LPDLPETFTQFRKCVEG--IDIAHPIDAPSR--LPPMPK---------GAqLP--T 187 Vibrio paraha...
uhmanoa:IL0122 141 --ETPNNT--LFSEQELPFE----LADLPETFSQFRKKVEP--LSRNFSVQPVNA--LPSLPK---------NIsYPgfK 199 Idiomarina lo...
BAC88776       131 -rSFWGTT--LVHPDDLPFA----IEAIPELFTDFRKQVERs-AAINPPLPAPAK--LPPLPav------dpGE-IP--Q 191 Gloeobacter v...
NP_991249      134 -qTFWGST--LYHRDDLPFSh---IGGLPDVYTQFRKAVEAq-GRVRPVLSTPEQ--VKSPPSgl-----eeGP-IP--T 196 zebrafish
AAM26705       170 leLIWGST--MYHKDDLPFD----VFDLPDVYTQFRKSVEAk-CSIRSSTRIPLS--LGPTPsvd-----dwGD-VP--T 232 thale cress
AAU14279       143 meRHWGST--LYHIDDVPFDvtsgLSDLPDVFTPFRNKVESk-CKVRDVIPAPTAneLGHVPAsve----gfEW-MP--K 212 Ostreococcus ...
CAE76612       159 --KLWDDEkyLIHDRDTGITh---LNDLPDVFTTYRKQIEPlrEKARKTLPVPEKgaLPAYPDidmipsqqpPFnIPg-T 232 Neurospora cr...
2IJG_X         233 LEKLGVEPQEvtr---------------gmRFVGGESAGVGRVFEYFWKKD-LlKVYKETRNGMLGPDYSTKFSPWLAFG 296 thale cress
AAF94962       188 MDIVTEPNHS--------------------AFVGGEQAGLTHCQNYFSSLL-P-SRYKETRNGLDGMDYSTKFSPWLALG 245 Vibrio choler...
BAC61546       188 LSSFYFDESA--------------------LFSGGEWSGLAHCRRYFFSGL-A-SSYKETRNGLDGMAYSTKFSPWLALG 245 Vibrio paraha...
uhmanoa:IL0122 200 AETLNELASD--------------------DFEGGERAALTHLTSYFSGES-A-GTYKQTRNALDDFSSSTKFSPWLAQG 257 Idiomarina lo...
BAC88776       192 LADLGLESPVtder-------------avlQFKGGETSGLARLEEYFWQKSlL-KSYKQTRNGMLGADYSSKFSAWLALG 257 Gloeobacter v...
NP_991249      197 FDSLGQTEPLddcr-------------safPCRGGETEALARLKHYFWDTNaV-ATYKETRNGMIGVDFSTKFSPWLALG 262 zebrafish
AAM26705       233 LEKLGVEPQEvtr---------------gmRFVGGESAGVGRVFEYFWKKDlL-KVYKETRNGMLGPDYSTKFSPWLAFG 296 thale cress
AAU14279       213 PSDLPFASSEiamdcdkrik-dcldersvlDFKGGESNALARVKYYLWESDrL-ATYFETRNGMLGGDYSTKLAPWLALG 290 Ostreococcus ...
CAE76612       233 CEELVDAVVRpvknflkdlpdfpekaesshPFRGGETSAHKRIDHLVLSGG-M-KSYKDSRNGLLGPDFSTKLSAYLAQG 310 Neurospora cr...
2IJG_X         297 CISPRFIYEEVQRYEK------------ERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQK-- 362 thale cress
AAF94962       246 AVSPKTIYAMLQRYEA------------VHGANDSTYWIFFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSFYAQ-- 311 Vibrio choler...
BAC61546       246 CVSPRMIHAMLKQYEQ------------TQGANDSTYWIYFELLWREYFYWYARCYQQRLFRFGGIRNQPPLTSFYAH-- 311 Vibrio paraha...
uhmanoa:IL0122 258 CLSVRQIMAALRAYET------------EFGENESSYWISFELLWREYFFWYALKHGKRLFAFSGLSGKSPKTSFYSE-- 323 Idiomarina lo...
BAC88776       258 CLSARYIHEQVQTYET------------KRIKNDSTYWLIFELLWRDYFRFIAAKHGDRLFYTAGLRGLDIPWKEDWE-- 323 Gloeobacter v...
NP_991249      263 CISPRYIYEQIKKYEV------------ERTANQSTYWVIFELLWRDYFKFVALKYGNRIFYMNGLQDKHVPWKTDMK-- 328 zebrafish
AAM26705       297 CISPRFIYEEVQRYEK------------ERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHLGGPRNVQGKWSQDQK-- 362 thale cress
AAU14279       291 CVSPRHVVSEIRRYES------------ERVENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRRASWKRDEK-- 356 Ostreococcus ...
CAE76612       311 CVTARQIHHALVAYEDgtgtkykgadgfGEGDNQGTETVRMELLWRDYMRLCHQKYGDKLFRVEGFNGKHTDYEGEDKky 390 Neurospora cr...
2IJG_X         363 -----------------------LFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFET 419 thale cress
AAF94962       312 -----------------------RFLQWKHGETPFPIVNACMRQLNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFET 368 Vibrio choler...
BAC61546       312 -----------------------RFQQWKNGTTPYPIVNACMHQLNHTGYMSNRGRQLVASCLVHELGLDWRYGAAYFET 368 Vibrio paraha...
uhmanoa:IL0122 324 -----------------------RFQKWCSGNTPYPIVNACMKQLNATGYMSNRGRQLVASCFVHELSLDWRYGAAYFEQ 380 Idiomarina lo...
BAC88776       324 -----------------------RFELWRTGQTGFPLVDANMRELAATGFMSNRGRQNVASFLTKNLGIHWHMGAEWFES 380 Gloeobacter v...
NP_991249      329 -----------------------MFDAWKEGRTGVPFVDANMRELALTGFMSNRGRQNVASFLTKDLGLDWRLGAEWFEY 385 zebrafish
AAM26705       363 -----------------------LFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFET 419 thale cress
AAU14279       357 -----------------------ILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRHGADWFEH 413 Ostreococcus ...
CAE76612       391 gwrtantsialpgqeptpekvseILARFNAGTTGMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEM 470 Neurospora cr...
2IJG_X         420 CLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDPEGEYVAFWLQQL 472 thale cress
AAF94962       369 QLVDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQAHTYDPKGEFVAKWCGTA 421 Vibrio cholerae O1 biovar El Tor str. N...
BAC61546       369 QLIDYDVGSNWGNWQYLAGVGADPRG-SRQFNLEKQTQMYDPNHEFIERWQGRD 421 Vibrio parahaemolyticus RIMD 2210633
uhmanoa:IL0122 381 QLIDYDVSSNWGNWQYLAGVGADPRG-HRQFNLEKQTERYDPDNEFIERWAGDL 433 Idiomarina loihiensis L2TR
BAC88776       381 RLIDYDVASNWGNWNYTAGVGNDARG-FRFFNILKQARDYDPDGAYVKHWLPEL 433 Gloeobacter violaceus PCC 7421
NP_991249      386 LLVDHDVCSNYGNWLYSAGIGNDPRE-NRKFNMIKQGLDYDNNGDYVRQWVPEL 438 zebrafish
AAM26705       420 CLLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDPEGEYVAFWLQQL 472 thale cress
AAU14279       414 HLLDYDTASNWGNWCAAAGMTGG-RI-NR-FNIAKQTKDYDPAGEYIKTWVKEL 464 Ostreococcus tauri
CAE76612       471 LLVDYDVSSNWANWQYVAGVGNDPRGaARIFNPVKQAFDYDKDGTYVRTWVPEV 524 Neurospora crassa
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