2N94


Conserved Protein Domain Family
zf-HIT_BCD1

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cd23023: zf-HIT_BCD1 
zinc finger HIT (zf-HIT) found in Box C/D snoRNA protein 1 (BCD1) and similar proteins
The zf-HIT domain-containing family includes BCD1 and its yeast counterpart Bcd1p, both of which have been characterized as assembly factors for box C/D snoRNPs. BCD1, also known as serologically defined breast cancer antigen NY-BR-75 or zinc finger HIT domain-containing protein 6 (ZNHIT6), is required for the accumulation, processing, transport, and biogenesis of box C/D snoRNAs, specifically U3 and U8, in the nucleoplasm. Bcd1p is essential for cellular viability in Saccharomyces cerevisiae and contributes to the specific stability of box C/D snoRNAs. Members of this family contain a zf-HIT domain, characterized by a fold in "treble-clef" through interleaved CCCC and CCHC ZnF motifs that both bind a zinc atom. The zf-HIT domain of Bcd1p is necessary but not sufficient for yeast growth, and although it lacks direct RNA-binding capacity, it helps Bcd1p maintain steady-state levels of box C/D snoRNAs. Additionally, the zf-HIT domain of Bcd1p is functionally interchangeable with that of Hit1p, another box C/D snoRNP assembly factor belonging to the zf-HIT family.
Statistics
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PSSM-Id: 467795
Aligned: 164 rows
Threshold Bit Score: 51.8511
Created: 28-Mar-2019
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:2N94; Saccharomyces cerevisiae Bcd1p binds two Zn2+ ions.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #        #  #    #   #   #     #   
2N94_A         6 VLCgVCGIkEFKYKCPRCLVqTCSLECSKKHKTRdnCSGQ 45  Saccharomyces cerevisiae S288C
KAE8262935     7 SPCeECAQ-PSKYTCPACGAhTCSLVCTKKHKSKa-CDAN 44  Tilletia walkeri
PWN47815       7 STCqVCQQaQAKYTCPKCRSkTCSLSCDKEHKSD--CHGQ 44  Violaceomyces palustris
SAM81696       7 ATCqQCQLqPSKYTCPTCKArTCSLACTKLHKAQi-CTSS 45  Ustilago bromivora
SHO76596       7 AVCaSCQAaSCKYTCPYCTAtTCSLPCFRQHKATlaCEQA 46  Malassezia sympodialis ATCC 42132
CEH17298       7 RTCvECNTnPSRYNCPTCRQsTCGLACSKNHKAV--CDVR 44  Ceraceosorus bombacis
KIW64980       2 QVCsVCANqTSKYRCPSCRAsSCSLPCFQTHKSG--CTHP 39  Phialophora americana
XP_016262122   4 QPCaICGSrDSKYRCPSCRVtSCSLSCYKTHKNQ--CSQV 41  Exophiala oligosperma
XP_003881536  18 ATCqVCRRaVSKYTCPKCRArSCSSKCYKVHNAGr-CAKQ 56  Neospora caninum Liverpool
KIV77404       4 KTCsVCGGsSFKYHCSSCRAtSCSLQCYKAHQGQ--CARL 41  Exophiala sideris

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