Conserved Protein Domain Family
RRM_SKAR

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cd12681: RRM_SKAR 
RNA recognition motif (RRM) found in S6K1 Aly/REF-like target (SKAR) and similar proteins
This subgroup corresponds to the RRM of SKAR, also termed polymerase delta-interacting protein 3 (PDIP3), 46 kDa DNA polymerase delta interaction protein (PDIP46), belonging to the Aly/REF family of RNA binding proteins that have been implicated in coupling transcription with pre-mRNA splicing and nucleo-cytoplasmic mRNA transport. SKAR is widely expressed and localizes to the nucleus. It may be a critical player in the function of S6K1 in cell and organism growth control by binding the activated, hyperphosphorylated form of S6K1 but not S6K2. Furthermore, SKAR functions as a protein partner of the p50 subunit of DNA polymerase delta. In addition, SKAR may have particular importance in pancreatic beta cell size determination and insulin secretion. SKAR contains a well conserved RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Statistics
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PSSM-Id: 410082
Aligned: 20 rows
Threshold Bit Score: 99.6533
Created: 21-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9BY77       280 TKMTVNNLHPrVTEEDIVELFCvcGALKRARLVHPGVAEVVFVKkDDAITAYKKYNNRcLDGQPMKCNL 348 human
CCD80139     170 FRVEIRNLQPsVTLDDVFELFSsvGSLRLCTVTRPGQAEVIYNHsSDALEAIERYNGReLDGRPMRVSL 238 Schistosoma mansoni
XP_023933431 303 YKILVTNLHPvVTEEDIIELFSamGALKKARMLKPGVAEAVFFKkEEAVLAIKKYHNReLDGVPMQVKM 371 Lingula anatina
XP_002166508 159 AKVVVSNLHPnVTDDDIKELFGvlGDLRRASLTGLGSAEVIYKNtDDAFAAYSKYHGRnLDGQPMILKL 227 Hydra vulgaris
ELU06106     332 YRVLITNLHGvVTQDDIVELFGslGALKKARVIKNGVAEVIYVErHCALAAVKKYHMReLDGRPMQVNM 400 Capitella teleta
CBY39128      62 YRLQVTNLNAsVSESDLVDLFCaiGAVRDSRLQSTGEAIVTFVKrAAAMAAITKYNGReLDGQKISVNP 130 Oikopleura dioica
EFX88147     258 HRIYVSNLHPkVTQEDIVELFGdvGSLVRASLQRPGVAEVVYVRrDDALRAVDVYHNRqLDGLPMHCSM 326 common water flea
XP_787816    270 TRLIISNLQIsVTVDDIKELFGaiGELTKTRMVKPGLAEVVYVSrTDAIQAISTYHNReLDGKPMLCKL 338 purple urchin
XP_002110100 239 HVVVVSNLYYtVTEDDIKELFGaiGRLRSARLNTNGIAEVVYVNeSDAIKAVSSYHNRsLDGYPMHCKL 307 Trichoplax adhaerens
ABY20501     366 YRLLVSNLHTnVTTADIRELFSdiGPVYDARVVRPGTAEVIYKSlEHAEKAVDTYHHRqFDDQPMHCVL 434 fruit fly
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