Conserved Protein Domain Family
Sema4F_C

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pfam19428: Sema4F_C 
Semaphorin 4F C-terminal
Semaphorins are a large and diverse family of proteins, widely expressed across divergent animal phyla. They are secreted and membrane-associated proteins, conserved both structurally and functionally, and they are divided in eight classes (1-7 and V). They are involved in axon guidance and influence the migration of neurons and glial cells. This entry represents the C-terminal domain of Semaphorin 4F (also known as Semaphorin-W) which plays a role in visual system development and in oligodendrocyte precursor migration and differentiation. Like other Semaphorin 4 members, it includes a Ig-like domain, adjacent the PSI domain (plexin-semaphorin-integrin domain, conserved across all semaphorins), a transmembrane region and a short intracellular tail. The latter is rich in proline residues similar to other transmembrane semaphorins suggesting that it may interact with cytoskeletal or signalling proteins. It also contains a cyclic nucleotide-dependent protein kinase phosphorylation site, involved in signal transduction into the cell. Sema4F is found in glutamatergic synapses, preferentially in postsynaptic dendrites, attached to SAP90/PSD-95-scaffolding protein. Sema4F interacts with SAP90/PSD-95 PDZ domains through the critical last last three C-terminal amino acids.
Statistics
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PSSM-Id: 437260
Aligned: 5 rows
Threshold Bit Score: 258.312
Created: 27-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EMP24651     398 PVSLAARVVLPCTPPSAWATCTWQRPSQD-ATVYALRSDGLEFTVTEDTLGDYTCQCMEVGAGGVVASYSLVRGSssanT 476
XP_007496944 599 PVVPAAHVVLPCSPRSAWATCVWHRPGGLiEDAVIPRLDGLEVLVTQGALGTYACECQEGGMTQVVATYHLFWGE----L 674
KYO34898     561 PVSLGARVVLPCAPPSAWSVCTWQRPSPD-AHAYTERRDGLEFTVTAAMLGDYVCQCTEGGVGATAASYSLVWGSgttsA 639
O95754       576 PVATAAHVVLPCSPSSAWASCVWHQPSGV--TALTPRRDGLEVVVTPGAMGAYACECQEGGAAHVVAAYSLVWGS----Q 649 human
1_pfamImport   1 PMAIATPMAFPCSPLSEWSDCFY------------PRRDG-EVVVTPGAMGAY-CECQEGGAARVVAAYSLVWGS----H 62 
EMP24651     477 WKtteRNYSVLVGLLLFFLGFAAGSGCFFIYERRRQERLQRELLSRERNGLDL--MQSNTTSCSHEPHTP-SSPEDERHP 553
XP_007496944 675 QG---RGRIVGSGLAGFILGAVASTLILLLLGRQRQRQRQQELLARNKVGLDLgaPPSGTTSCSHDPPSPsPSPEDERLP 751
KYO34898     640 WQetrRSYSIVTGLVCFLLGLVLGCVGCFFLDWRRRERQQRELINREKNGLDL--MQSNTTSCSHEPHTP-SSPEDERHP 716
O95754       650 RDapsRAHTVGAGLAGFFLGILAASLTLILIGRRQQRRRQRELLARDKVGLDLgaPPSGTTSYSQDPPSP--SPEDERLP 727 human
1_pfamImport  63 QVppqLAHTVGAGLAGFFLGVLAASLTLNLIGRHQQRQQEREPLARNEVGSDLgaPPSGTTSSSQDPPS---SPEDEWLP 139
EMP24651     554 LATA--KKNGSLNGFPHLYINELDKDQ--ARIYLTGVPLAKCDETSI 596
XP_007496944 752 LALAlaKRGSNLNGFPPSFLRDSHPGPnqAHILLTTAPLATCDETSI 798
KYO34898     717 LATT---KNGNLNGFPPLYISELDKDQ--ARIFLAGAPLAKCDETSI 758
O95754       728 LALA--KRGSGFGGFSPPFLLDPCPSP--AHIRLTGAPLATCDETSI 770 human
1_pfamImport 140 LDLD--KRGSGFGGFPPTFLLESCPSP--AHIRLTGAPLTTCDETPI 182
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