1WJ2


Conserved Protein Domain Family
WRKY

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smart00774: WRKY 
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DNA binding domain
The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Statistics
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PSSM-Id: 214815
Aligned: 121 rows
Threshold Bit Score: 57.1112
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1WJ2_A         17 LDDGYRWRKYGQKVVKGNP-YPRSYYKCT---T--PGCGVRKHVER----AATDPKAVV---TTYEGKHN-H 74   thale cress
EEC76340      304 PSDNYSWRKYGQKPIKGSP-HPRGYYRCSs--K--KDCPARKHVER----CRSDPAMLL---VTYENEHN-H 362  Indian rice
AAD32676      243 PADDFSWRKYGQKPIKGSP-YPRGYYKCSt--V--RGCPARKHVER----DPSDPSMLI---VTYEGDHR-H 301  oat
NP_565574     242 PPDEYSWRKYGQKPIKGSP-HPRGYYKCSt--F--RGCPARKHVER----ALDDSTMLI---VTYEGEHR-H 300  thale cress
EAY96413      151 PADSWSWRKYGQKPIKGSP-HPRGYYKCSs--Y--RGCPARKQVDK----CRNDASLLI---ITYTSDHN-H 209  Indian rice
AAS16888      173 stDLWAWRKYGQKPIKGSP-YPRGYYKCSs--L--KACMARKMVER----SPEKPGVLV---ITYIAEHC-H 231  Japanese rice
BAH59425     1209 egDLWTWRKYGQKDILGSR-FPRGYYRCAykfT--HGCKATKQVQR----SETDSNMLA---ITYLSEHN-H 1269 thale cress
DAA05096      175 apDLWAWRKYGQKPIKGSP-YPRGYYRCSs--N--KNCAARKQVER----CRFDPSFLL---LTYTGAHSgH 234  Japanese rice
XP_001708807  586 siDFFRWKKYGHKPQTDTRlDSKSYYRCAf--F---NCPARRTITFfyslSSDGTETVEsviVQYENQHT-H 651  Giardia lamblia ATCC ...
NP_001059355 1331 KDDGWNWIKYGQKDIIGSK-YQRSYLRCNq--MhsTGCKARKIVEP----Sn-DDLNIWl--VTYIYEHN-H 1391 Japanese rice
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