Conserved Protein Domain Family
Gemini_AL1
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pfam00799: Gemini_AL1 
Geminivirus Rep catalytic domain
The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer.
Links
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Statistics
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PSSM-Id: 366313
Aligned: 5 rows
Threshold Bit Score: 129.585
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q88888   8 FQIAAKNYFLTYPNCSLSKEEALDQL------QRLQTPTNKKYIKVARELHEN-GEPHLHVLIQFEGKFNCKNQRFFDLV 80  Tomato pseudo-curly t...
P0CK40   7 FRVQSKNYFLTYPRCTIPKEEALSQL------QKIHTTTNKKFIKVCEERHDN-GEPHLHALIQFEGKFICTNKRLFDLV 79  Bean golden yellow mo...
P14991   7 FRIQAKNIFLTYPQCSLSKEEALEQI------QGIQLSSNKKYIKIARELHED-GQPHLHVLLQLEGKVQITNIRLFDLV 79  Beet curly top virus ...
P14990  10 FSHRNANTFLTYPKCPENPEIACQMI------WELVVRWIPKYILCAREAHKD-GSLHLHALLQTEKPVRISDSRFFDIN 82  Maize streak virus - ...
P60470  11 tmfQAQNIFLTYSQCDLSKEEIKTFIinlcneKKLQIN----YLIIGIENHQDhKGKHHHVFFQLNKQFRTRDLTIFNIP 86  Onion yellows phytopl...

Q88888  81 SPTRST-------------HFHPNIQ-----GAKSSSDVNSYVDKDGDTI-EWGEFQID 120 Tomato pseudo-curly top virus
P0CK40  80 STTRSA-------------HFHPNIQ-----GAKSSSDVKEYIDKDGVTI-EWGQFQVD 119 Bean golden yellow mosaic virus-[Puerto Ri...
P14991  80 SPTRSA-------------HFHPNIQ-----GAKSSSDVKSYVDKDGDTI-EWGEFQID 119 Beet curly top virus - California [Logan]
P14990  83 G-------------------FHPNIQ-----SAKSVNRVRDYILKEPLAVfERGTFIPR 117 Maize streak virus - [South Africa]
P60470  87 KNIKEKklidhenikikdfFYSPHIEprpgnPIKDTTDVRNYVKKDGDFI-EEGTFK-H 143 Onion yellows phytoplasma OY-M
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