4R6U,3F62,2VXT,4XFT,1J0S,4XFU,4XFS,4HJJ,4EEE


Conserved Protein Domain Family
beta-trefoil_IL18

?
cd23298: beta-trefoil_IL18 
beta-trefoil domain found in interleukin-18 (IL-18) and similar proteins
IL-18, also called Iboctadekin, or interferon gamma-inducing factor, or IFN-gamma-inducing factor, or interleukin-1 gamma, or IL-1 gamma, is a proinflammatory cytokine primarily involved in polarized T-helper 1 (Th1) cell and natural killer (NK) cell immune responses. Upon binding to IL18R1 and IL18RAP, it forms a signaling ternary complex which activates NF-kappa-B, triggering synthesis of inflammatory mediators. IL-18 works synergistically with IL12/interleukin-12 to induce IFN-gamma synthesis from Th1 cells and natural killer (NK) cells. IL-18 contains a beta-trefoil domain, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.
Statistics
?
PSSM-Id: 466780
Aligned: 63 rows
Threshold Bit Score: 107.683
Created: 5-Apr-2021
Updated: 27-Apr-2023
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:receptor interaction site [polypeptide binding site]
Evidence:
  • Structure:4R6U; Homo sapiens IL-18 in complex with IL-18 receptor, contacts at 4A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                   #   #          # ######                       ###      # ##          
4R6U_B         6 ESKLSVIRNlNDQVLFIDq---gNRPLFEDMTDSdsr-------dnaPRTIFIISMYKDSq-----PRGMAVTISVks-- 68  human
XP_028648679  45 GPVCKIIRNgREQILMLDn----ADLIFQDRTVMes---------ksETNKFKIQKYRSTdssptkHKGIPVTVQVtkd- 110 reedfish
XP_018598185  58 KCITKMIQNgQSQFLVLDrdydqLQLGFHDITMEqf---------tnANCKFKIQLLRSSde--epMKGQPVVLQVdfe- 125 Asian bonytongue
XP_015193300  41 KADYCFIRNsKHMFLVVTs----ECLHFEKRTTKqw---------ksDDMRFLLKVFNNTe----dHRDAAVALELhge- 102 spotted gar
XP_007910306  40 SDKWSKYSN-KSKLLTPKnn--qSCSLVITLDDQvdgtvnnlghltgGDVKLSFLMYKAVp----vSPSMSVVFLLeqg- 111 elephant shark
XP_023648394  65 KLLTSRIQNkNEQFLVLGidggeRLLEFRPLTVEel---------ksASCRFLIRPFRNTn----pSSEFPITLQIlse- 130 Paramormyrops k...
XP_010866484  40 TCQSGIMRNkRSQCLVIDg----DSFQFESKNNQelq-------spgGNFVIRIQKYYCDgt---gDEKCPVTISVq--- 102 northern pike
KAE8592637     2 QTYRATIQNnRDMYLTSYpf--tSELFFETYNIFn-----------pGNIYNTITTYRNTe-----GNLLSVGITIean- 62  tropical clawed...
OCT72533      16 KSYNATMQNiSEAYLTSYps--iSEVYFVKTATEd-----------pGYLEYTFTEYINTe-----TSASSVAITFsvg- 76  African clawed ...
KAE8592633    16 NSYNATIKNiNELYLTSYps--sSDVPVCFASTAmk---------epGYCDYTVTEYMNTe-----GSSLSIAITFskne 79  tropical clawed...
Feature 1                                              ###    #  #                    ##         
4R6U_B        69 ekISTLSSE----NKIISFKEMNPPDNIKdtKSDIIFFQRSvpGHDNKMQFESSsyEGYFLASEke--rDLFKLILKKED 142 human
XP_028648679 111 ciTYTIACVedgnNKKVSLKKESIPTSIKsdSYDVIFHLKSvsHLVGTYQFESAkwDRWFLACEkqtnpELYKLTVKQIG 190 reedfish
XP_018598185 126 gkTWTLCCSd---DGGVNAKIEDLPDPICssKHRAVFFLRQieGQLYRYRFESSllDNMFLSFEhd-peGLVKLVLKINN 201 Asian bonytongue
XP_015193300 103 grTRALYCKe---ESTVAYKETALADTIPgdSHESIFYLRR--IQDNTFTLESSkyKGSYLFCYqd--gPCYKLILKKMT 175 spotted gar
XP_007910306 112 grQYYLRCEe---GHNLRFIEGEAPTDIEnhQSDCIFYLKL--YNGHYYHFESAqyRNWYICTSfn--nGICKLDLKTIQ 184 elephant shark
XP_023648394 131 gkTWTLWCLdeggSKVVYPNLQDPPDKIEstKHEALFFLMKikGHRDWYRVASSmwPSFFLSFEck-pqKLVKLVLKEKK 209 Paramormyrops k...
XP_010866484 103 --DRVVACYengdKKGIKAKPLVPIPSIEgnKHESIFYKQEi-QGTRYFKFESSlfPTWFLAFSe----SSGLLALKFME 175 northern pike
KAE8592637    63 ssTYILCSNg---NGSLILQRGELPKNIIgtVTTLLFYQET--SSVETYSFRSAdgNNQYLCYN-----TEDRAVLKNVT 132 tropical clawed...
OCT72533      77 aeTYILCSAg---NGSLRFEKGPLPETIEgtKCPFIFYKKNftAGDDSYSLQCAdgLGQYLSYD-----DSELAILKDAP 148 African clawed ...
KAE8592633    80 eeTYRLCSEg---NGNVGLMKGKLPETIEgtECSFLFFKNDfaVGDDSYSFQCAdgHGKYLSYD-----KHNQAILKDAP 151 tropical clawed...
Feature 1                    
4R6U_B       143 e-LGDRSIMFTV 153 human
XP_028648679 191 tdEVDSNKEYSH 202 reedfish
XP_018598185 202 --DEDDTQKLQM 211 Asian bonytongue
XP_015193300 176 d-EVDEGQHVTI 186 spotted gar
XP_007910306 185 k-QPNEMALFCS 195 elephant shark
XP_023648394 210 --NDDESLNLKV 219 Paramormyrops kingsleyae
XP_010866484 176 --EVDETCEIEY 185 northern pike
KAE8592637   133 naSIDETCHMTI 144 tropical clawed frog
OCT72533     149 nvTTDETCKMTI 160 African clawed frog
KAE8592633   152 dvKTDETCKMTV 163 tropical clawed frog

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap