1JKG


Conserved Protein Domain Family
TAP_C
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smart00804: TAP_C 
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C-terminal domain of vertebrate Tap protein
The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Links
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Statistics
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PSSM-Id: 197882
Aligned: 30 rows
Threshold Bit Score: 73.4904
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1JKG_B    187 SSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFM 249 human
NP_595996 534 qPRPEQAMLDTRQQIVLKIKAETGLNDYYAHMCCEQNNWDYNSALASFLELKSRNVIPAEAFs 596 Schizosaccharomyces pombe 972h-
XP_757835 600 nqAPAAGINEQQHAMSLQLAAQTGLIYPFAVQCLQENGWDYNLALANFQTLKASNAIPPQAFA 662 Ustilago maydis 521
XP_446123 528 PPDVQMNMNNIQLELLNKLHLETKLNAEYTYMLAEQSGWNYENAVKSFQS--SVNNIPREAFV 588 Candida glabrata CBS 138
NP_015156 537 PPDVQSRLNPVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS--SMNGIPREAFV 597 Saccharomyces cerevisiae S288c
NP_982438 525 PPEVQAKLSPIQLQLLNRLHQDTKLNAEYTYMLAEQSGWDYDVALKSFQS--SVNNLPRNAFV 585 Ashbya gossypii ATCC 10895
XP_452635 528 SPEVQAKLSPVQLELLQKLHLETKLNAEYTYMLAEQSLWNYDNAIQGFRN--SANNLPREAFI 588 Kluyveromyces lactis NRRL Y-1140
XP_461006 552 PAEVKANLNPIQQDILVKILLETKLNLQYGIMLCEQSNWDYQQCTINFKN--SVASLPRDAYI 612 Debaryomyces hansenii CBS767
XP_500185 468 PGDDFAGLNPDQALIVRQLMEATRLNARYARMCAEQAGFVPEQTMALFKQAQEGGSLPPDAFM 530 Yarrowia lipolytica CLIB122
XP_717440 556 PADIKARLNQIQQELLVKILLETKLNINYGIMLCEQSNWDYQQASVNFKN--SAASLPSDAFV 616 Candida albicans SC5314
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