Conserved Protein Domain Family
PTB_CED-6

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cd01273: PTB_CED-6 
Cell death protein 6 homolog (CED-6/GULP1) Phosphotyrosine-binding (PTB) domain
CED6 (also known as GULP1: engulfment adaptor PTB domain containing 1) is an adaptor protein involved in the specific recognition and engulfment of apoptotic cells. CED6 has been shown to interact with the cytoplasmic tail of another protein involved in the engulfment of apoptotic cells, CED1. CED6 has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup.
Statistics
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PSSM-Id: 269971
Aligned: 26 rows
Threshold Bit Score: 227.161
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putativeputative
Feature 1:putative phosphoinositide binding site [chemical binding site]
Evidence:
  • Comment:based on the phosphoinositide binding site of Dab1
  • Comment:this is in a similar region as the phosphoinositide binding site found in PH domains.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                        #                                                               
BAB30939      14 MHTPEALSKHYIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFArhikk----segqKIPKVELQISIYGVKILEPKT--- 86  house mouse
XP_002408682  26 IHPADALQKGHVAYLVKFLGFTEVDQPKGIEVVREGIRKLKFNqqlkr----segtKVPKVELTISVDGVAVQDPKS--- 98  black-legged tick
XP_002612937  30 VHPPDVLLKGHVTYQTKLLGCTEVQQAKGTEVVKEAIRKQKFSthvkr----aegaKPIKVELSISADGLGISDTKN--- 102 Florida lancelet
ADY42873      60 IHPPDILLNGRVEYSVKMLGVTEVNEPKGTHVIREAIHAIRFQlqvsrsvtghsgaKLKKVDLQINVDGVTVVENKT--- 136 pig roundworm
EGI58300      31 IHPPDALQKGHIAYLVKYLGSTEVDQPKGIEVVKEAICKLKFNqqlkk----segtKTPKVELTISIDGVAIQEPKTktt 106 Panamanian leaf...
XP_003367488  42 IFPPDTLTHGQIEFSVKYLGSVAVPQSKGIDVIKEALNRSHGY-------------KLQKVLIQISIYGITLVDVKT--- 105 Trichinella spi...
NP_498203     48 IHPPDYLINGHVEYVARFLGCVETPKANGSDVAREAIHAIRFQrdlkrseqtretaKLQKVEIRISIDNVIIADIKT--- 124 nematode
EGT39801      60 IHPPDYLINGHVEYVARFMGCVETSKEKGSETAREAIHAIRFQrdvkrpeqsretaKLQKVEIRISIDNVVIADAKT--- 136 Caenorhabditis ...
XP_003111047  48 IHPPDFLINGHVEYVARFLGCVETSNENGTAAAREAIHAIRFQrdlkrseqsretaKLQKVEIQISIDNVIIADSKT--- 124 Caenorhabditis ...
XP_002641125  45 IHPPDFLINGHVEYGARFLGCVETAKENGTAVAREAIHAIRFQrdlkrseqtretaKLQKVEIKISIDYVRVDDAKT--- 121 Caenorhabditis ...
Feature 1                               #                    #                            
BAB30939      87 -KEVQHNCQLHRISFCADDKTDKRIFTFICKDse-snKHLCFVFDSEKcaEEITLTIGQAFDLAYRKFLESGG 157 house mouse
XP_002408682  99 -KRIFHQHPLHRISYCADDKSDKKSFSFIAKEsd-geRHSCFVFSSEKlaEEITLTIGQAFDLAYRKFLETSG 169 black-legged tick
XP_002612937 103 -KILMHNFPLHRISFCADDKTDKRIFAFIAKDte-knVHLCFVFDSDKcaEEITLTIGQSFDLAYKRFIETSG 173 Florida lancelet
ADY42873     137 -KMVLHKYPLHRISFCADDKQDKRVFSFIAKAen-skRHDCFVFLSEKlaEQITLTVGEAFDLAYQKFLENNG 207 pig roundworm
EGI58300     107 pKRIMHQYPLHRISYCADDKGEKKFFSFIAKEed-aeRHTCFVFVSDKlaEEITLTIGQAFDLAYRRFLETSG 178 Panamanian leafcutter ant
XP_003367488 106 -KVLVCQHALHRISFCADDKQDKRVFAYIVKRsaessEHDCHVFLCNKvaEEITLTVGEAFDLAYRRFLENNG 177 Trichinella spiralis
NP_498203    125 -KAPMYTFPLGRISFCADDKDDKRMFSFIARAegasgKPSCYAFTSEKlaEDITLTIGEAFDLAYKRFLDKNR 196 nematode
EGT39801     137 -KGIMYTFPLGRISFCADDKDDKRMFSFIARAdgssgTPCCYAFTSEKlaEDITLTIGEAFDLAYKRYLDKNR 208 Caenorhabditis brenneri
XP_003111047 125 -KAVMHQFPLPRISFCADDKDDKRMFSFIARNdd--gKPSCYAFTSEKlaEDITCTIGEAFDLAYKRFLDKNR 194 Caenorhabditis remanei
XP_002641125 122 -KTMMYQFQLPRISFCADDKDDKRMFSFIARGdd--gKHFCYAFTSEKlaEAITCTIGEAFDLAYKRFLDKNR 191 Caenorhabditis briggsae

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