4IQY,5CMS,5FSX,5FUD,5KIV


Conserved Protein Domain Family
Macro_OAADPr_deacetylase

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cd02908: Macro_OAADPr_deacetylase 
Click on image for an interactive view with Cn3D
macrodomain, O-acetyl-ADP-ribose (OAADPr) family
Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. This family includes eukaryotic macrodomain proteins such as human MacroD1 and MacroD2, and bacterial proteins such as Escherichia coli YmdB; these have been shown to be O-acetyl-ADP-ribose (OAADPr) deacetylases that efficiently catalyze the hydrolysis of OAADPr to produce ADP-ribose and free acetate. OAADPr is a sirtuin reaction product generated from the NAD+-dependent protein deacetylation reactions and has been implicated as a signaling molecule. By acting on mono-ADP-ribosylated substrates, OAADPr deacetylases may reverse cellular ADP-ribosylation.
Statistics
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PSSM-Id: 438955
Aligned: 74 rows
Threshold Bit Score: 206.595
Created: 20-Sep-2005
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitecatalytic site
Conserved site includes 28 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:4IQY: human MacroD2 binds a mono-ADP-ribosylated substrate, contacts at 4A
  • Structure:5CMS: Escherichia coli YmdB binds adenosine-5-diphosphoribose, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ###          ###    ###### #  #                                           
4IQY_A        68 KVSLYRGDITLLeVDAIVNAANASLLGGGGVDGCIHRAAGpCLLAECRNLng-------cdTGHAKITCGydLPAKYVIH 140 human
CAA22759       3 GITLVQGDITRQsADAIVNAANSSLLGGGGVDGAIHRRGGpAILAECRRLraghl-gkglpTGRAVATTAgdLDARWVIH 81  Streptomyces co...
NP_252383      3 EVRVWQGDITRLaVDAIVNAANSSLLGGGGVDGAIHRAAGaELVAACRLLhg-------ckTGEAKITRGfrLPAAHVIH 75  Pseudomonas aer...
AAM05027      28 RIRIIERDITELkVDAIVNAANNTLLGGGGVDGAIHRAAGpGLLEECRTLng-------cpTGEAKITKGylLPAKYVIH 100 Methanosarcina ...
AAQ66780       3 KITITVGDITRFeGDAIVNAANHTLLGGGGVDGAIHRAAGpELLEECRTLng-------cpTGESKITGGynLPAQYVIH 75  Porphyromonas g...
WP_009849371   3 DMRSVQADITMLnVDAIVNAANTSLLGGGGVDGAIHRAAGpALLDECRRLgg-------cnAGEAKMTAAyrLPARYVIH 75  Mariprofundus f...
WP_009962264   4 SLRALQANITTLpVDAIVNAANSSLLGGGGVDGAIHRAAGpELLNQCRLLgg-------ckTGDAKLTMGyqLPAKFVIH 76  Verrucomicrobiu...
ETO29507      45 NLIVKQGDLTKFeGDCIVNAANEVMLGGGGVDGAIHRAAGpQLREFCLQHvaasssgvrcrTGEAKITPGfnLKASYIIH 124 Reticulomyxa fi...
WP_100265830   3 DIRILQTDITRLhVDAIVNAANNTLLGGGGVDGAIHQAAGpKLLEECRRLgg-------cvTGDVKVTQGyeLPAKWVIH 75  Mariprofundus f...
PSC74698      14 RLAIRRGDLTKFdGCAIVNAANERMLGGGGVDGAIHRAAGpALLEACKQVpevrr-gvrcpRGEARVTPGgdLPARHVIH 92  Micractinium co...
Feature 1          # #                                    ########                               
4IQY_A       141 TVGPIArghingshKEDLANCYKSSLKLVke--nNIRSVAFPCISTGIYGFPnepAAVIALNTIKEwlaknhhevDRIIF 218 human
CAA22759      82 TVGPVWsat--edrSGLLASCYRESLRTAde--lGARTVAFPAISTGVYRWPmddAARIAVETVATtkt----svTEIRF 153 Streptomyces co...
NP_252383     76 TVGPVWrggd-ngeAELLASCYRRSLALAeq--aGAASVAFPAISCGIYGYPleqAAAIAVEEVCRqrpa-hsslEEIVL 151 Pseudomonas aer...
AAM05027     101 TVGPIWqegt-kgeDEFLASCYRKSLELArk--yDVKTIAFPTISTGAYGFPserAARIAVSQVKEflkv-nelpEIVFL 176 Methanosarcina ...
AAQ66780      76 TVGPVWhggq-hgePELLASCYRTSLSIAld--kGLKSIAFPCISTGVYRYPkdqAARIALATIGEiia---drpIDVTI 149 Porphyromonas g...
WP_009849371  76 TVGPIWhggg-egeAEVLAACYRNSLALAlg--rSLASVAFPSISTGAYAYPqeaAARIAVRTCADfqdi-ndapELILF 151 Mariprofundus f...
WP_009962264  77 TVGPVWrggq-egePELLASCYRLSLRLAss--nGVRTIAFPCISTGIYGYPvelAAEIALHIAREestr-dtgiEEILF 152 Verrucomicrobiu...
ETO29507     125 TVGPIFgnv--qspHLLLTSCYKNSLNLAeeqngKIKTIAFPAISCGVYGYPkeaAMEIALDTCAQhkk---rflTHISF 199 Reticulomyxa fi...
WP_100265830  76 AVGPVWqggi-ygePELLASCYRNALAVAhy--kGLESIAFPAISTGVFGYPavrAAKVAVREVLDfqdf-hggsELVIF 151 Mariprofundus f...
PSC74698      93 TVGPVYssp--atsAPLLEGAYASSLRLAne--hKLERVAFPAISCGVFGYPldeSAEIAVRTSQReag----slQEIHF 164 Micractinium co...
Feature 1        # ##  #         
4IQY_A       219 CVFLeVDFKIYKKKMN 234 human
CAA22759     154 VLFDaRAYEAFAARLG 169 Streptomyces coelicolor A3(2)
NP_252383    152 VAFDsSMAERYQRLLG 167 Pseudomonas aeruginosa PAO1
AAM05027     177 VCYNkEACKNIKKALE 192 Methanosarcina acetivorans C2A
AAQ66780     150 VCFS-EADKEFYITQD 164 Porphyromonas gingivalis W83
WP_009849371 152 VCFDaVTLAIYHGLLG 167 Mariprofundus ferrooxydans
WP_009962264 153 CCFSaRDLKVYTRLLE 168 Verrucomicrobium spinosum
ETO29507     200 VLFGsDIYAISVNLQI 215 Reticulomyxa filosa
WP_100265830 152 ACFDaAMLDLYRGLLI 167 Mariprofundus ferrinatatus
PSC74698     165 FLFGqKELDAWLAAAR 180 Micractinium conductrix

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