6IGM,6GEN,6GEJ


Conserved Protein Domain Family
ASKHA_NBD_Arp6

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cd10210: ASKHA_NBD_Arp6 
nucleotide-binding domain (NBD) of actin-related protein6 (Arp6) and similar proteins
Arp6, also called actin-like protein 6, is required for formation and/or maintenance of proper nucleolar structure and function, plays a dual role in the regulation of ribosomal DNA (rDNA) transcription. In the presence of high glucose, Arp6 maintains active rDNA transcription through H2A.Z deposition and under glucose starvation, it is required for the repression of rDNA transcription, and this function may be independent of H2A.Z. Arp6 is also required for telomere silencing in both fission and budding yeast. It is a component of the budding yeast and Arabidopsis SWR1 complex (SWR1C) and the human SWI2/SNF2-related CBP activator protein (SRCAP) chromatin remodeling complexes which catalyze the exchange of the histone H2A with the H2AZ. Drosophila Arp6 colocalizes with HP1 (heterochromatin protein 1) in the pericentric heterochromatin, and vertebrate Arp6 also interacts with HP1. Human Arp6 is encoded by the ACTR6 gene. Arabidopsis thaliana ACTIN RELATED PROTEIN 6/EARLY IN SHORT DAYS 1/SUPPRESSOR OF FRIGIDA 3 (encoded by ARP6/ESD1/SUF3) participates in regulating several leaf and flower development stages. It is needed for Flowering locus C (FLC, the master repressor of flowering) and FLC-like gene expression in the shoot and root apex, and for the activity of the floral repressor pathway.
Statistics
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PSSM-Id: 466816
Aligned: 59 rows
Threshold Bit Score: 365.335
Created: 6-Oct-2006
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:nucleotide binding site [chemical binding site]
Evidence:
  • Structure:6GEJ; Saccharomyces cerevisiae ARP6 binds metal bound ADP, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #### #                                                                    
6IGM_G         3 TLVLDNGAYNAKIGYs--HENVSVIPNCQFRSKTARLKTftanq-----------ideiKDPSGLFYILPFQKGYLVnWD 69  human
6GEN_R         5 PIVIDNGSYEIKFGPs-tNKKPFRALNALAKDKFGTSYLsnhi-------------kniKDISSITFRRPHELGQLTlWE 70  Saccharomyces c...
6GEJ_R         5 PIVIDNGSYEIKFGPs-tNKKPFRALNALAKDKFGTSYLsnhi-------------kniKDISSITFRRPHELGQLTlWE 70  Saccharomyces c...
Q12509         5 PIVIDNGSYEIKFGPs-tNKKPFRALNALAKDKFGTSYLsnhi-------------kniKDISSITFRRPHELGQLTlWE 70  baker's yeast
EDO06909      11 RAVVDNGSGLLKFSLassVKPPFVLPNCIGHPKRKFTSQnladgsasggddhgaigdgcYSLWEYFCLRPFSDGMLYePN 90  Babesia bovis T2Bo
Q6BML9         5 YFVIDNGSYNIKAGFs-nQDAPIKHQNALSKARDGLIYVgney------------lvqtNNYSGMIFKRPYDHGHLIsWE 71  Debaryomyces ha...
XP_004996814  13 WWVLDNGSGTLKASVv-hQSPQANSPNSNTAVTLENAVLagsggrr------qgfsddfEDLSRLYWSRPCEQEFVTdHA 85  Salpingoeca ros...
CDW72015      15 RIILDNGAYEIKYSAa-sELKPQKIYNAVGKDKKTRAVYagnkl----------feeleNGHSNMQITYPIIRGLLHdSD 83  Stylonychia lemnae
OII78101       4 IVVVDNGSFSIKAGFageSLPRVCLPNCIGKVRRRERIYtcd---------------qiYTLSEYFSHHPFSEGLLIdTA 68  Cryptosporidium...
RKP01849      14 TWVIDLGADTIKAVAs-aTDDPRILPNVLIQGRDQRWRWpsdavhgvg---drgscsnhDALRQASWAHPFDGGLLTrWQ 89  Caulochytrium p...
Feature 1                                                                                        
6IGM_G        70 VQRQVWDYLFGKEMyqv----------dflDTNIIITEPYFn-FTSIQESMNEILFEEyQFQAVLRVnAGALSAHRYfrd 138 human
6GEN_R        71 LESCIWDYCLFNPSefdgfd-----lkegkGHHLVASESCMt-LPELSKHADQVIFEEyEFDSLFKSpVAVFVPFTKsyk 144 Saccharomyces c...
6GEJ_R        71 LESCIWDYCLFNPSefdgfd-----lkegkGHHLVASESCMt-LPELSKHADQVIFEEyEFDSLFKSpVAVFVPFTKsyk 144 Saccharomyces c...
Q12509        71 LESCIWDYCLFNPSefdgfd-----lkegkGHHLVASESCMt-LPELSKHADQVIFEEyEFDSLFKSpVAVFVPFTKsyk 144 baker's yeast
EDO06909      91 RQRNIWKKVMGNPHiqingspanllgvnpaTTALLITEPNMs-PAMCRQTMAEMIFEDlGFSLAAIItSQAASNFYYtqv 169 Babesia bovis T2Bo
Q6BML9        72 TEKAVWDYTFNKASpnqe--------ldasITHLTLTETPFq-LPQLSMNTDQIVFEEyGFNEYYRCaPASLVPWSNlgs 142 Debaryomyces ha...
XP_004996814  86 QEAHIWRHLQHKLQv--------------pEAAAMLCSSALtsFAPVNDGLAEIAFEElGCSSFCLLeAPALASYALp-- 149 Salpingoeca ros...
CDW72015      84 LETVIWKQIFSKFKkme-----------erASCLALTLPPVl-PDIVQNRLAEIVFEDfEFDGLFMSsTHSMIREAAmie 151 Stylonychia lemnae
OII78101      69 LQSDIWKYTFNKLNin------------plECTILVTEPFLn-PTPLQHSLSELIFEDfQFESAIIStCPQLIPFAFtpi 135 Cryptosporidium...
RKP01849      90 TQQTILDHAFDTWGvd------------paATDLVVTEPVLn-PAPLQHVYDEILYERyGFARVARVpAAALAFAAAaad 156 Caulochytrium p...
Feature 1                                                         ####                           
6IGM_G       139 n-------------------------------------pseLCCIIVDSGYSFTHIVPYCRSKKKkeaIIRINVGGKLLT 181 human
6GEN_R       145 gemrtisgkdedidivrgnsdstnstssesknaqdsgsdyhDFQLVIDSGFNCTWIIPVLKGIPYykaVKKLDIGGRFLT 224 Saccharomyces c...
6GEJ_R       145 gemrtisgkdedidivrgnsdstnstssesknaqdsgsdyhDFQLVIDSGFNCTWIIPVLKGIPYykaVKKLDIGGRFLT 224 Saccharomyces c...
Q12509       145 gemrtisgkdedidivrgnsdstnstssesknaqdsgsdyhDFQLVIDSGFNCTWIIPVLKGIPYykaVKKLDIGGRFLT 224 baker's yeast
EDO06909     170 tqqkrglspdla--------------lstvpksgarqenrsKCCLVLDCGFGATHSVPFVEGKPIqraALRSNIGGSHLN 235 Babesia bovis T2Bo
Q6BML9       143 se-----------------------------------sknnDFTLVVDSGYSGTWIVPIIYQNVYwkgVKKLPIGGAALN 187 Debaryomyces ha...
XP_004996814 150 ----------------------------------------gDCQLIVDSGFSSTRVCAVHRHCVVpgsVVRMPVGGRVIT 189 Salpingoeca ros...
CDW72015     152 hpvnl-----------------------------gggapsqQCEYVVDSGFSYTYGVPFFNGRPLkyaATRIDVGGKLLT 202 Stylonychia lemnae
OII78101     136 qipna-----------------------------tseqdinPCYLVLDCGYQCCNSVPMYQGTPIergCRRLDIGGYYLD 186 Cryptosporidium...
RKP01849     157 vvsg------------------------------gavpdpnPCALLIDLGHTSTTVVPIIAGRIVrhaVRRLPVAGRVLT 206 Caulochytrium p...
Feature 1                             #  ##                                                      
6IGM_G       182 NHLKEIISYRqlhVMDETHVINQVKEDVCYVSqDFYRDMDIAKlkge-------------------entvMIDYVLPDFS 242 human
6GEN_R       225 GLLKETLSFRhynMMDETILVNNIKEQCLFVSpVSYFDSFKTKdk------------------------hALEYVLPDFQ 280 Saccharomyces c...
6GEJ_R       225 GLLKETLSFRhynMMDETILVNNIKEQCLFVSpVSYFDSFKTKdk------------------------hALEYVLPDFQ 280 Saccharomyces c...
Q12509       225 GLLKETLSFRhynMMDETILVNNIKEQCLFVSpVSYFDSFKTKdk------------------------hALEYVLPDFQ 280 baker's yeast
EDO06909     236 AYLKNVSAIRtinLEFNELMVQHMKEESCYVSlDFDLELRAAArlrtvr----------------ghqclLHEYKLPLFT 299 Babesia bovis T2Bo
Q6BML9       188 GLLREIISFRhydIADEPVLINTIKEKTCFMAtDFEKSLANRKk-------------------------yRCEFILPDFK 242 Debaryomyces ha...
XP_004996814 190 NYLKDLVSYRhvnVSDQQQLVEELKLHTLRIVdNFAASLTQAKrktpk------------------dnpfMLDYLLPDYA 251 Salpingoeca ros...
CDW72015     203 NLLNEIISYKeinLQGETHLVNDIKEQLCYVStSFNEQLEICKqml---------------------npiAKEYVLPDYK 261 Stylonychia lemnae
OII78101     187 LLLKNFLAYRqidLSRNAFLVSKIKEIACYVStDFEKDLLQFSsdkrd------------------grslDHWVKLPEPS 248 Cryptosporidium...
RKP01849     207 NALNDLLSLRhvhLLDDAPAARALKEQVCFVAgDYATAMRRARrehaalraadiawtdavfpsaaaaptvLADYILPDGI 286 Caulochytrium p...
Feature 1                                                                                        
6IGM_G       243 TIKKGFCKpreemvls----------------------------------------------------------gkyksg 264 human
6GEN_R       281 TSFLGYVRnprkenv------------------------------------------------------------plped 300 Saccharomyces c...
6GEJ_R       281 TSFLGYVRnprkenv------------------------------------------------------------plped 300 Saccharomyces c...
Q12509       281 TSFLGYVRnprkenv------------------------------------------------------------plped 300 baker's yeast
EDO06909     300 AKNKNHVIkhfmshgpmtepllnesrrhvvhklanheplcpsdlellgvkqepepdevtqsqdsawsnteldnsvddknk 379 Babesia bovis T2Bo
Q6BML9       243 TTTTGFVKtkdtpi-------------------------------------------------------------dttgd 261 Debaryomyces ha...
XP_004996814 252 GRMHGHVLpredmkpv---------------------------------------------------------lpkptvg 274 Salpingoeca ros...
CDW72015     262 NNKRGQIRdpvvfqqlppdqe-----------------------------------------------qintntnqrapq 294 Stylonychia lemnae
OII78101     249 SSLSKSSQfyneeciapdpneliselp-----------------------------------eelvgiqgiynkgmkmsq 293 Cryptosporidium...
RKP01849     287 THPRGALRswhgpsrtprasqltavrd------------------------------------saaasgtataaptstpa 330 Caulochytrium p...
Feature 1                                                                               #  ##    
6IGM_G       265 eQILRLANERFAVPEILFNPSDIGIQe------------MGIPEAIVYSIQn--lPEEMQPHFFkNIVLTGGNsLFPGFR 330 human
6GEN_R       301 aQIITLTDELFTIPETFFHPEISQITk------------PGIVEAILESLSm--lPEIVRPLMVgNIVCTGGNfNLPNFA 366 Saccharomyces c...
6GEJ_R       301 aQIITLTDELFTIPETFFHPEISQITk------------PGIVEAILESLSm--lPEIVRPLMVgNIVCTGGNfNLPNFA 366 Saccharomyces c...
Q12509       301 aQIITLTDELFTIPETFFHPEISQITk------------PGIVEAILESLSm--lPEIVRPLMVgNIVCTGGNfNLPNFA 366 baker's yeast
EDO06909     380 nQVATLGVERFQIPELLFNPQDLGLEe------------CGIAELAHRTIIl--sPPCIQRDLAnNILLTGGStKFPGFE 445 Babesia bovis T2Bo
Q6BML9       262 vQSLALIDERFTIPESFYHPEIIFDNttsststiqnasfKNITDLVVECIMs--cPKVTQPLLSgNIITVGGNtNLPGFT 339 Debaryomyces ha...
XP_004996814 275 rQVIRLTNETFSPGELFFHPNDIGIDs------------VGVQECIAASLQr--cPEWLQPSLVqSIVLIGGNaNIPGFR 340 Salpingoeca ros...
CDW72015     295 lQAIKISNERFSVPEVLFTPQDIGINe------------AGLPEMIQQSVNk--cPKVMERQLYqNIIVSGGNaMFTGFR 360 Stylonychia lemnae
OII78101     294 tQFVKLSTERITIPEILFRPSDAGFNm------------EGISEMVITSIKs--cPIHLQPLLAsNILVSGGSsKFRNFH 359 Cryptosporidium...
RKP01849     331 pQHVLLGTERFHVPERLFTPPEHTDG-------------VGLVAAIRAAVAavaaASPLAPLLYaHIHLCGGTaALPGLA 397 Caulochytrium p...
Feature 1                                   #                                              
6IGM_G       331 DRVYSEVRCLTPT-DYDVSVVLp-eNPITYAWEGGKLISendd----------------fedMVVTREDYEENG 386 human
6GEN_R       367 QRLAAELQRQLPT-DWTCHVSVpegDCALFGWEVMSQFAktds----------------yrkARVTREEYYEHG 423 Saccharomyces cerevis...
6GEJ_R       367 QRLAAELQRQLPT-DWTCHVSVpegDCALFGWEVMSQFAktds----------------yrkARVTREEYYEHG 423 Saccharomyces cerevis...
Q12509       367 QRLAAELQRQLPT-DWTCHVSVpegDCALFGWEVMSQFAktds----------------yrkARVTREEYYEHG 423 baker's yeast
EDO06909     446 RRLHDELCKLLPA-EWDVQIHSs-lDRALTSFYGARMFAkdds---------------tfleAAITRNYYLEHG 502 Babesia bovis T2Bo
Q6BML9       340 DRLRHELVKELPI-DWHVQVKEtehNPDEASWFGGAQLTndei----------------innISISKKDYFEHG 396 Debaryomyces hansenii
XP_004996814 341 RRLEAELRSCLPQdLGAAHITLp-nDPQHAVWRGGCALAadte---------------aisaLAVSRATFAEHG 398 Salpingoeca rosetta
CDW72015     361 DRLYQDMQSLKPD-GSEVQIYEl-qNPITSAWKGLRQFCqnkn---------------nfeeYVVTRKEYQEEG 417 Stylonychia lemnae
OII78101     360 ARLQMDLTQMLPS-GWEINVRKadvNPQYVAWSGASIWSsspg----------------fmgYTTSRKQYHETG 416 Cryptosporidium ander...
RKP01849     398 RRLARALQADLVD-GTRVHITTr-pAPALDAVLGGATWVragradgadgapflptplpphaeIAVSRAEYLEHG 469 Caulochytrium protost...

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