5H23


Conserved Protein Domain Family
Peptidase_S3
?
pfam00944: Peptidase_S3 
Click on image for an interactive view with Cn3D
Alphavirus core protein
Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane.
Links
?
Statistics
?
PSSM-Id: 366379
Aligned: 3 rows
Threshold Bit Score: 320.406
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
5H23_A    1 CMKIENDCIFEVKHE-GKVTGYACLVGDKVMKPAHVKGTIDNADLAKLAFKRSSKYDLECAQIPVHMKSDASKFTHEKPE 79  
P03315  112 CMKIENDCIFEVKHE-GKVTGYACLVGDKVMKPAHVKGVIDNADLAKLAFKKSSKYDLECAQIPVHMRSDASKYTHEKPE 190  Semliki Forest virus
P03316  107 ALKLEADRLFDVKNEdGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPE 186  Sindbis virus

5H23_A   80 GYYNWHHGAVQYSGGRFTIPTGAGKPGDSGRPIFDNKGRVVAIVLGGANEGARTALSVVTWN-KDIVTKITPEGAEEW 156 
P03315  191 GHYNWHHGAVQYSGGRFTIPTGAGKPGDSGRPIFDNKGRVVAIVLGGANEGSRTALSVVTWN-KDMVTRVTPEGSEEW 267  Semliki Forest virus
P03316  187 GFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNsKGKTIKTTPEGTEEW 264  Sindbis virus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap