1BRS,1GOY


Conserved Protein Domain Family
barnase

?
cd00933: barnase 
Click on image for an interactive view with Cn3D
Barnase, a member of the family of homologous microbial ribonucleases, catalyses the cleavage of single-stranded RNA via a two-step mechanism thought to be similar to that of pancreatic ribonuclease. The mechanism involves a transesterification to give a 2', 3'-cyclic phosphate intermediate, followed by hydrolysis to yield a 3' nucleotide. The active site residues His and Glu act as general acid-base groups during catalysis, while the Arg and Lys residues are important in binding the reactive phosphate, the latter probably binding the phosphate in the transition state. Barstar, a small 89 residue intracellular protein is a natural inhibitor of Barnase.
Statistics
?
PSSM-Id: 238471
Aligned: 5 rows
Threshold Bit Score: 180.397
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
active site
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1BRS_B; barnase complexed with inhibitor barstar
  • Citation:PMID 8043575
  • Structure:1GOY_A; ribonuclease Bi complexed with guanosine-3'-phosphate (3'-Gmp)

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                              #                #       
1BRS_B        4 INTFDGVADYLQTYHK-LPDNYITKSEAQALGWvasKGNLADVA--PGKSIGGDIFSNREGKLPgksGRTWREADINYTS 80  Bacillus amyloli...
NP_347479    51 INDFQGVADYIHEYGY-LPDNYITKENAEELGWt-pGENLWDYA--PGKSIGGDIFTNSEGVLPtkrGRVWHECDINYFG 126 Clostridium acet...
NP_667517    51 LTQHQKVVKYLQTHHR-LPDFYLTKKQAREQGWdaqKGNLCDVL--PGKAIGGDRFSNRERQLPdakGRHWREADVNYRC 127 Yersinia pestis KIM
1GOY_A       10 INTFDGVADYLIRYKR-LPNDYITKSQASALGWvasKGDLAEVA--PGKSIGGDVFSNREGRLPsagSRTWREADINYVS 86  Bacillus interme...
ZP_00081341  66 GELAAMLQSLNGSNNRnLPPKFVTKAQAKKMGWr-pGRDLWASTrlKGKSIGGDRFANREGRLPa-gGKKWHEADLDYQG 143 Geobacter metall...
Feature 1             #              #        
1BRS_B       81 GFRNSDRILYSSDWLIYKTTDHYQTFTKIR 110 Bacillus amyloliquefaciens
NP_347479   127 GHRGADRLVYSNDGLIYGTSDHYETFTRYY 156 Clostridium acetobutylicum
NP_667517   128 GRRGSDRLLYSNDGLIYLTQDHYKHFIRME 157 Yersinia pestis KIM
1GOY_A       87 GFRNADRLVYSSDWLIYKTTDHYATFTRIR 116 Bacillus intermedius
ZP_00081341 144 GHRGAKRLIYSNDGLRMVTVDHYRTFTEVP 173 Geobacter metallireducens

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap