Conserved Protein Domain Family
phage_arpU

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TIGR01637: phage_arpU 
phage transcriptional regulator, ArpU family
This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]
Statistics
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PSSM-Id: 273725
Aligned: 9 rows
Threshold Bit Score: 122.506
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
BAA36673       7 FLHPVDLKAVRKIVIKEL-KDYRALKVQLENK---KESVDAGISPf------pSIRDSFILNELKVKQMERALEN----- 71  Bacillus phage ...
Q47836         3 LLREVDFKQTRCNARDVL-KNFRRLERMAGRSlidIKSPIITDMPkap--khgNKAEDAIIQMMDIEAERDAILAal--- 76  Enterococcus hi...
CAA66778      12 LFPEVDEKKTIANVKRFLsVELPRMERVSHQDitcLKSPVVSDLPkap--asdNKAETTIYRKLYAEQVVWRTSEai--- 86  Lactobacillus p...
CAB52515       4 LFEEFDCEKTCNRVDEFLtDDLDRLILMAGRNltdLRSPSLSLAPghs--ngeNHNEAAIIRGLNAEAEIRAIHHti--- 78  Lactobacillus p...
WP_011054810   3 FFPEIDIQKTKSNAKRKL-REYPRWRRIANDVdtqKVTATYSFEPrqpygtpsKPVERLALNRVSAEQELDAIEQav--- 78  Streptococcus p...
WP_029439666   8 KMPVLDEEETKNEVEKVF-EEYRMYLSQMPSDilpKVTASYSIVPpsvtnefnSSTENIAIERLQYEMARDKFMNwvhra 86  Bacillus thurin...
WP_010990872   6 ELPQINNVRTKRNVIRAL-EKYKIMRVRLGERrmpKLTSTLTIVPpsfnnefhSTTEESAIWNVDAVNEAKAYVKlidhh 84  Listeria innocua
WP_010897459   5 AIPKLDQKKVRAAVEKEL-EAYRFCLLTLDESelpKMTQSFSLIPpshtnafhSKTEEAAVHNVDRRNEKRAHINrvvka 83  Bacillus halodu...
WP_003721742   8 ENKDINYIKTVQEVKRFF-ADFERFRMITGLSkkpHLLRNGFLEEpqfepvafS-----ARHNKEVILEARWLVEkytem 81  Listeria monocy...
BAA36673      72 --CLDDEERMIIEKKYLTASQTKDIHIYMELGMKKDTYYEIKQRAILRIATALGII 125 Bacillus phage phi105
Q47836        77 -mALSLISRQILYYSFCVPDSFSNYRISREVGYSERSIQRMKSEALIEFAEAYKHG 131 Enterococcus hirae ATCC 9790
CAA66778      87 -dGCDHISQVLLKRLFADKSAIYDYQLMNELGYGNDRYYFYKNRACLQFADTYLLD 141 Lactobacillus phage phig1e
CAB52515      79 -yHLPEMSKIIMRDLYIY--QMENWQVSEAIRYSHTQYNVLKHRAQLFFADSFDHW 131 Lactobacillus phage phiadh
WP_011054810  79 smILEPERRRILYDKYLAPYKKADKVIYTELCMSESFYYDTLDIALLAFAELYREG 134 Streptococcus pyogenes
WP_029439666  87 vnRLPKRERQIIHMYYMEEEKGYDPDIMDAVRLGRTTYYKVKGKALLRLAFSLRKE 142 Bacillus thuringiensis
WP_010990872  85 inQLPERSRQVILTKFIE--ENSDYEAMLAIHVSHSQYKEEKRKAIERLAYQLNIV 138 Listeria innocua
WP_010897459  84 vsKLTETERAIVVQRYLQEDETFDYIIYNEMGLSHRQYYRIKARAFYklalalklp 139 Bacillus halodurans
WP_003721742  82 lnQMDDLYRTILMECYVE--RKQDVAVMMDLPYEIAQFKRIKKRAVLELATLMGIL 135 Listeria monocytogenes
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