Conserved Protein Domain Family
WSS_VP
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pfam12175: WSS_VP 
White spot syndrome virus structural envelope protein VP
This family of proteins is found in viruses. Proteins in this family are approximately 210 amino acids in length. There is a conserved NNT sequence motif. These proteins are structural envelope proteins in viruses. This is the beta barrel C terminal domain. There is a protruding N terminal domain which completes the proteins. Three of four envelope proteins in white spot syndrome virus share sequence homology with each other and are present in this family - VP24, VP26 and VP28. VP19 is the other major envelope protein but shares no sequence homology with the other proteins. These proteins are essential for entry into cells of the crustacean host.
Links
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Statistics
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PSSM-Id: 403413
Aligned: 3 rows
Threshold Bit Score: 200.178
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
AAL33006   1 MHM---WGVYAAILAGL-----TLILVVISIVVTNIELNKKL---------DKKDKDAYPVESEIinltingvaRGNHFN 63 
AAL33423   1 MDLsftLSVVSAILAIT-----AVIAVFIVIFRYHNTVTKTIethtdnietNMDENLRIPVTAEV---------GSGYFK 66 
AAL33313   1 MEFgnlTNLDVAIIAILsiaiiALIVIMVIMIVFNTRVGRSVv-------aNYDQMMRVPIQRRAkvms----------i 63 

AAL33006  64 FVNGTLQTRNYGKVYVAgQGTSDSELVKKKGDIILTSLlgDGdHTLNVNKAESKELELYARVYNNTKRDITVDSVSLSPG 143
AAL33423  67 MTDVSFDSDTLGKIKIR-NGKSDAQMKEEDADLVITPV--EG-RALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPK 142
AAL33313  64 rgERSYNT-PLGKVAMK-NGLSDKDMKDVSADLVISTV--TApRTDPAGTGAENS-NMTLKILNNTGVDLLINDITVRPT 138

AAL33006 144 L-------NAtGREFSANKFVLYFKPTVLKKNRINTLVFGATFDEDIddtnrhyllSMRfSPGNdLFKVG---------E 207
AAL33423 143 I-------NP-SKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPI---------AAT-AGGN-LFDMYvhvtysgteT 203
AAL33313 139 ViagnikgNTmSNTYFSSKDIKSSSSKITLIDVCSKFEDGAAFEATM---------NIGfTSKN-VIDIKde------iK 202

AAL33006 208 K 208
AAL33423 204 E 204
AAL33313 203 K 203
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