Conserved Protein Domain Family
PHA02778

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PHA02778: PHA02778 
major capsid L1 protein; Provisional
Statistics
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PSSM-Id: 222928
Aligned: 102 rows
Threshold Bit Score: 772.834
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
225927575   1 MTLWLQQSGTIYLPPAkPV-AKVLSTDEYVIGTNLFFYASSERLLTVGHPYFEIPNPAlPGALAVPKVSGSQYRVFRCML 79 
9627492    32 MAYWLPNNQKLYLPPA-PV-QRILSTDEFTTRTDIYYYASSDRLLTVGNPYYPILDGD---TVTVPKVSPNQYRVFRCKL 106
21844541    1 -----MNVPPLYIPSQvTV-ASPYSTDDYVTPTEHLYHLQTDRLITVGNPYFQIADADhPGVIAVPKVSANQYRCFRLQL 74 
23217038    2 ASYWSSNSQKVYLPPT-TL-TKAVSTDTYVTRLGIYYHGHSDRLLTVGHPFYEITNGR-DQTMRVPKVSANQFRVFRVIL 78 
20428635    2 ASYWSSNSQKVYLPPT-TL-TKAVSTDTYVTRLGIYYHGHSDRLLTVGHPFYEITNGR-DQTMRVPKVSANQFRVFRVIL 78 
113200746   1 MAVWVSNSQKLFLPPN-PV-TKVLHTDTYIKRTSVFCHAASDRLLTVGNPFFSILAED-KITVKIPKVSSNQFRVFRVTL 77 
164429769   1 MAVWVPNSQKLFLPPP-AV-TKVLNTDAYIKRTNIFCHADTERLLTVGNPFFEILAED-DRTVKVPKVSSNQYRVFRISL 77 
258611057   1 MAVWVSNSQKLFLPPN-PV-SKVLHTDTYVKRTSVFCHAGSDRLLTVGNPFFSILDED-QKTVKVPKVSSNQYRVFRVSL 77 
21326235    4 AGPAPALPSALYIPNAaPLqPPLFTTDDFVSPTDYVYHVNTGRLLMVGNPYFSVPDAD-KDRAAVPKVSGNQYRVFRLKL 82 
212286055   1 MAVWTPSTKALFVPPV-NV-PTLYSTREYVRRTSYVFHGTTERLITIGNPYFALTDNA---TVTVPKVSAYQHRVFRIKL 75 
225927575  80 PDPN-KFALIERSFYNPERERLVWKVRGLQLGRGGPLGLGTSGHPLFNKVADTENPTTYPAa---ETDEQRVNLSMDPKQ 155
9627492   107 PDPN-RFAFGEKSVYDPEKQRLAWCIRGVEIARGQPLGIGITGHPLYNRLEDVENPGKYPSa---PGTDNRQNVGLDPKQ 182
21844541   75 PDPNgPFPLPSNNLYDPEKHRLVWQLVGLEIDRGQPLGVGLVAAPAFNRGRDAEANSRAAWad--pEGDNRISCAFEPKH 152
23217038   79 PNPN-KFALPDSNVFDPDSERLVWAVKAMEICRGQPIGPQVTGHPLFNRFEDVENPAAYKPgf--gtGDKRQNMASDYKQ 155
20428635   79 PNPN-KFALPDSNVFDPDSERLVWAVKAMEICRGQPIGPQVTGHPLFNRFEDVENPAVYKPg--fGTGDKRQNMASDYKQ 155
113200746  78 PDPN-QFAFAERPAHDPEKERLVWGLRGMDVGRGQPLGIGVTGHPLFNRYTDNENPGKYQQqm-aQPKDSRQNVAFDAKQ 155
164429769  78 PDPN-AFAFGERPVHDPDNERLVWGLRGIDVSRGQPLGNGVTGHPLFNKLFDNENPAKINTk---EGKDARVSLAGDVKQ 153
258611057  78 PDPN-QFAFAERPTHDPEKERLVWGLRGMDVGRGQPLGIGVTGHPLFNRFSDVENPGKYQDk--aQPKDSRQNVGFDAKQ 154
21326235   83 PDPNdQFDLPD-GLFDPEKFRYVWQLVGLEVCRGQPLGVGISAAPAFNKGRDVESPARLVAddatREDDNRVSVGLDPKQ 161
212286055  76 PDPN-KFPIPESAVGDRDTTRLVWAVRGIQVNKSQPLGVGASGNTMFNGLQDFAETHHPSMekpdPPEDRRVNAAFDAKQ 154
225927575 156 VQLLIVGCEPALGEHWDV-AKPCSd--EVNQNQGDCPPIQLLNTVIQDGDMCDIGFGAANFKTLQQDKSGVPLDIVDSIC 232
9627492   183 TQMFIVGCVPAQGEHWSR-ALTCS---NQVVKKGDCPPIQRMSGMIEDGDMGDIGYGNLDFRVLQENKSEVPLEVVDSIC 258
21844541  153 NQMLIVGCAPAVGQHWGL-GTKC----PNETPDTKCPPIELVNSNIQDGDMSDIGFGAMDFNALGLNRSDVPMELAASVA 227
23217038  156 IQMVVLGCRPALGEHWGKtRSICPg-iQNNVLTGDCPAIELFHTTIEDGDMVDIGLGNLDFAQLQADKSGAPLDIVQSIC 234
20428635  156 IQMVVLGCRPALGEHWGK-TRSICpgiQNNVLTGDCPAIELFHTTIEDGDMVDIGLGNLDFAQLQADKSGAPLDIVQSIC 234
113200746 156 TQVLIVGCSPALGEHWSA-ARPC----NGVKKKGECPPLELKNTYIQDGDMMEIGYGAMDHRGLSQNKSDAPLDTVFSIT 230
164429769 154 TQVLIVGCAPAWGEHWNK-TSPCG-----KVVKGECPPIELKNTVIQDGDMIDIGYGAMDFRSLSQNKSDAPLDIVRSIC 227
258611057 155 TQVLIVGCTPAMGEHWES-APACNg-----aVKGSCPPLELRNTVIQDGDMLEIGYGAMDFRNLSRNRSDAPLDIILSIS 228
21326235  162 NQMLIVGCAPAYGQHWGK-ATPC----PDDTLDTQCPPIELISSTLQDGDMCDIGFGCMDFAALAANTSDIPLELINTVS 236
212286055 155 SQALIVGCIPPVGQHWDA-AKRC----VEDNNKDMCPPLELQHTVIEDGDMIDMGMGTLNFKSLSLNWSTLPLELINSVS 229
225927575 233 KWPDLIKMEQNIYGDNLFFFTKKEQAYARHYFARAGTNGDPIPDGttpnqdaFYLSPDQAGQApqkTLASYTYFPTVSGS 312
9627492   259 KYPDYLGMSKETHGNSCFFYARQARLYSRHFFNRAGVQGETVPES-------LYKKGKDGQAQs--TLALATYSGTPSGS 329
21844541  228 KYPDWIKMHTDAHGDSCFYYVTREQIYARRYWQQSGVPGEPVP---------ETVPIASREQI---EKNNSAYMACPSGS 295
23217038  235 KYPDTLKMAQEITGDTMFFSARREQSYLRHMMTRAGINKEAIPEA-------LYIKGATEPQN---TVGTSVYCGVVSGS 304
20428635  235 KYPDTLKMAQEITGDTMFFSARREQSYLRHMMTRAGINKEAIPEA-------LYIKGATEPQN---TVGTSVYCGVVSGS 304
113200746 231 KYPDYLKMSKEASGDSMFFFARREQEYIRHFFSREGAVGEAVPED-------LYFKPDGSEQQn--NFSTAVYYGAPSGS 301
164429769 228 KYPDYLKMAKEATGDSMFFFARREQLYTRHFFSRDGESGEKIPED-------LYIKGEQSRMT----PGTQVYFGTQSGS 296
258611057 229 KYPDYLKMSKEASGDSMFFFARREQEYIRHFFTREGKVGEDVPEA-------LMYPADDSQPQk-tNLGTPVYYGAPSGS 300
21326235  237 KYPDWIRMHNDPKGDCCFFLMRREQLYARHMWQHSGGIGEAIPs--------VYLNTSFTSTN------NCAYMCVPSGS 302
212286055 230 KYPDWLTMNADPYGNHCFFMLKREQVYMKGVGLHLGNIGEDEPTT-------MFRKGTTGQKYq--TPGRHSWFPLLSGS 300
225927575 313 LVSSEGQLFNRPYWIQRAQGTNNAICWNNNLFLTVVDNTRNTNFTISVSKtaiENPSQYNYKADNFKQYLRHVEEYDVEL 392
9627492   330 LVSSDAVLFNRPYWLERAQGQNNGILWNNDLFVTVLDNTRGTHFSISIAT-----QDENDYTASNYKQYTRHVEEFELEF 404
21844541  296 VITSDTNLFNRPYWLSRAQGTNNGILWNENLFVTVLDNSRNVIMKISSLAegaQENNATVYDWKNYYECVRHVEEYGISA 375
23217038  305 LFSSDAQIFNRPFWLNQAQGLNNGIAWNNQLFVTAVDNTRATNFTITVAT---DEREKDTYDAGSFNAYLRHVESYELQF 381
20428635  305 LFSSDAQIFNRPFWLNQAQGLNNGIAWNNQLFVTAVDNTRATNFTITVAT---DEREKDTYDAGSFNAYLRHVESYELQF 381
113200746 302 LTSTDSQIFNRPYWLQRSQGLNNGICWLNQLFVTVGDTTRGTNMTITVAN-----EEQSTYDSSKFTTYLRHTEEFELSF 376
164429769 297 LTSSDSQIFNRAYWLQRSQGLNNGMCWLNQLFVTVGDTTRGTNMTFSIAT-----SDNGDYDASNFKTYVRHSEEFELAF 371
258611057 301 LTSSDSQIFNRPYWLQRSQGLNNGICWLNQLFVTVGDTTRGTNMTISVSN----EADPEKYDSSKFSVYLRHTEEFELSF 376
21326235  303 VYTSDTQLFNRPYWLSKAQGPNNGVCWGDDLFITVLDNTRGGVMNISTKP----TDSGDVYKPSDFREYVRHVEEYELSC 378
212286055 301 LSTSDNQLFNRPYWLENSTAPNDGICWHNQMFVTCVDTTRNTIFQISQFKk--GVTATADYKEANYDMYARHVEEYEISF 378
225927575 393 VFQLCKVPLEPDILAHLNVMDPTILENWQLAFVPPPPQSIEDNYRYIRSLATRC--PPEESETQSKDPYKEFNFWNVDLT 470
9627492   405 IFQLVKINLSTEVLAYLHGMDPSILDNWNLTLGPPNDGSLADKYRFIESLATKC--PDNVEVTKP-DPYKGRIFWNIDLT 481
21844541  376 IVRLCRVTLTAENLGSIYRMNPDILKKWGIQEAPLGPQSAEDKYRFTSSQAITCqlPQNPPNNAPDDPYKTENYWTVDCR 455
23217038  382 VFELCKVKLTPENLTILHQQDPGILKGWELGVTPPSGSVLEDTYRYINSVATKC--PPNPPEEVQEDPWGRFAFWRVDLS 459
20428635  382 VFELCKVKLTPENLTILHQQDPGILKGWELGVTPPSGSVLEDTYRYINSVATKC--PPNPPEEVQEDPWGRFAFWRVDLS 459
113200746 377 IFQLCIVPLTPDVLAHLHSLNSHILDKWNIGLQAPTATLLEDRYRYLDSLATRC--PDKAPPSPETDPYAGYSFWLVDLS 454
164429769 372 IFQLCVVPLSPEVLAHLHTLNPAILDRWNLGLQASTSSVLEDRYRFLASLATPC--PDKVTVKEPEDPYAGYSFWSVDLS 449
258611057 377 IFQLCIVPLTPDVIAQLHSLNPLILDKWNIGLQPPTATLLEDKYRYIDSLATRC--PSKVPPKPSEDPYSGLTFWMVDLT 454
21326235  379 VLRLCKVPLSPDVLASLYRAVPHVLGRWGISEYPQADTTPEDKYRYISSQATRCplPAADTPTPVQDPWADMTFWTVDCT 458
212286055 379 ILQLCSIKMDLPVLNHLHNMDASLLDDWGFGATPPQNLTVEDQYRFLNSKATKC--PPPPATPADADPWGKYKFWDVDCT 456
225927575 471 ERFSAELSQFPLGRKFLFQTGLLksy---------trsGTSNSTKRLRSISSSGTTRAKRRRV 524
9627492   482 ERLTADLDQFSLGRKFLYQHARIs-------------nRKRSLPASRNGGGTSSSSTKRRKK- 530
21844541  456 ERLSDDLLRYPLGRKFLQLPRTSv-------------sTRRAIGAGSATTGNTKSSTRKRKRN 505
23217038  460 ERFSLDLDQFPLGRRFLALSAPR-----------------TRTSAAKRKTPVSAKSSKQRRKG 505
20428635  460 ERFSLDLDQFPLGRRFLALSAPR-----------------TRTSAAKRKTPVSAKSSKQRRKG 505
113200746 455 EKFSQDLDQFPLGRKFLAQSSLP-----------------LNRKRSRSPSSTSKRSVKRKKNK 500
164429769 450 ERFSQDLDQFPLGRKFLAQSNLSt-------------qRSVRKRARSPSTPRTPRKTVKRRKK 499
258611057 455 EKFSQDLDQFPLGRKFLAQSNLS-----------------TTRKRARSPSTSKSTRTVKKKKS 500
21326235  459 SRISPELPRFPLGRKFLALPGPRpatplygkrsataaaLTGAAGVRSAGVRSGVRTAKRRRR- 520
212286055 457 AQISSDLTPFPLGRRFQQLYPQA--------------------------GKPAPSNPRKRRRG 493
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