Conserved Protein Domain Family
Flavi_capsid

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pfam01003: Flavi_capsid 
Flavivirus capsid protein C
Flaviviruses are small enveloped viruses with virions comprised of 3 proteins called C, M and E. Multiple copies of the C protein form the nucleocapsid, which contains the ssRNA molecule.
Statistics
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PSSM-Id: 366413
Aligned: 27 rows
Threshold Bit Score: 106.259
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q7THX1    6 RGPGINRAIYMLKRGLPRVfPLVGVKRVVISLLDGIGPLRFVLALVSFFK---FTALSPTKALLGRWRALEKSVAMKHLT 82   Japanese encephalit...
Q5G264    4 KAILKGKGGNPPRQKPKVV--AKKSRQRPTAL-----PRALVLSRMLEIVwqvITMAPRSPALKTFWRIVPLQQAQAALK 76   Karshi virus
Q04538    2 MTTSKGKGGGPPRRKLKVT--ANKSRPATSPM-----PKGFVLSRMLGILwhaVTGTARPPVLKMFWKTVPLRQAEAVLK 74   Tick-borne powassan...
Q6JJM0    4 KAILKGKGGGPPRRVSKET--AKKTRQRVVQM-----PNGLVLKRIMEILwhaMVGTARSPLLKSFWKVVPLKQAMAALR 76   Omsk hemorrhagic fe...
A0EKV0    4 KAILKGKGSGPPRRALKET--ARKTRQLRVQM-----PNGLVLMRMMGILwhaIAGTARGPVLKSFWNAVPLRQAITALR 76   Greek goat encephal...
Q9IG39    4 KAVLKGKGGGPPRRASKVA--PKKTRQLRVQM-----PNGLVLMRMLGVLwhaLTGTARSPVLKAFWKVVPLKQATLALR 76   Langat virus
Q91B85    4 GAVLKGKGGGPPRRVPKET--AKKTRQGPGRL-----PNGLVLMRMMGVLwhmIAGTARSPILKRFWATVPVRQAIAALR 76   Alkhumra hemorrhagi...
A0EKU2    4 KGILKGRGSGPPGRRPKET--TKKTRQKTEFM-----PKGLVLMRMLGVLwhaMAGTARTPVLKSFWRTVPVKQGLAALR 76   Gadgets Gully virus
Q1X881    5 KAQGKTLGVNMVRRGVRSL--SNKIKQKTKQIGNRPGPSRGVQGFIFFFLfniLTGKKLTAHLKKLWRMLDPRQGLAVLR 82   Yellow fever virus ...
Q32ZD4    6 GGPAGRRVVNMLKRPASVS-PIKGIKRLIGNLTDGRGPLRVVLAFIAFFR---FAAIMPTQGLLRRWRVMNKSEALKHLT 81   Rocio virus
Q7THX1   83 SFKRELGTLIDAV-NKRGRKqnkrggnGGTTLWFmsltIAAVCVGA 127  Japanese encephalitis virus
Q5G264   77 RIRKVVGSLLQNL-QKRGKRrsa-vdwTGAVTMV----IVLPLCLA 116  Karshi virus
Q04538   75 KIKRVIGNLMQSL-HMRGRRrsg-vdwTWIFLTM----ALMTMAMA 114  Tick-borne powassan virus (strain lb)
Q6JJM0   77 KIKKAVSTLMIGL-QKRGKRrst-tdwTGWLLVA----MLLSIALA 116  Omsk hemorrhagic fever virus
A0EKV0   77 KIKRAVSALMVGL-QRRGKRrsa-tdwISWLLVI----TLLGVVLA 116  Greek goat encephalitis virus
Q9IG39   77 KIKRTVSTLMVGL-HRRGSRrtt-idwMTPLLIT----VMLGMCLT 116  Langat virus
Q91B85   77 KIRKTVGLLLDSLnRRRGKRrst-tglLTSILLA----CLATLVIS 117  Alkhumra hemorrhagic fever virus
A0EKU2   77 KLSRAVAFLARSL-RLRGNRrgvrwdyTTLILFL----CVVFISSA 117  Gadgets Gully virus
Q1X881   83 KVKRVVASLMRGL-SSRKRRsnemalfPLLLLGL------LALSGG 121  Yellow fever virus isolate Angola/14FA/1971
Q32ZD4   82 SFKKEISNMLNII-NRRKAKrg----nGSVLLWIalvtGSMALRLG 122  Rocio virus
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