2D7D,1D2M


Conserved Protein Domain Family
uvrb

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TIGR00631: uvrb 
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excinuclease ABC, B subunit
All proteins in this family for wich functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 273185
Aligned: 20 rows
Threshold Bit Score: 1108.52
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2D7D_A   4 RFELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPN 83  Bacillus subtilis
Q50939  10 PFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLYAEMREFFPE 89  Neisseria gonorrhoeae
Q55170   5 LFSLHAPFRPTGDQPTAIASLIESLQGEHKFQTLLGATGTGKTFTMASVIAELGRPTLVLAHNKTLAAQLCNELRQFFPE 84  Synechocystis sp. PCC...
Q56243   2 TFRYRGP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPE 80  Thermus thermophilus HB8
P94846   3 LFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFFPH 82  Helicobacter pylori 2...
O51776   8 DFFLKSEYLPAGDQPKAIKEIENSILLGNKYQTLKGVTGSGKTFTIANIIKDLNRPALVVSHNKTLAAQLYREFKDFFPN 87  Borrelia burgdorferi B31
O83154   3 EFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVANVIARVQKPTLVISHNKTLSAQLYREFKGFFPD 82  Treponema pallidum su...
O67708   7 RFKLKTNLKPAGDQPKAIKKLLENLRKGVKEQTLLGVTGSGKTFTLANVIAKYNKPTLVVVHNKILAAQLYREFKELFPE 86  Aquifex aeolicus VF5
P47319  10 LFQLSTNYIPTGDQPEAIKKLSEFKTK---QQVLLGATGTGKTFTIANVIQNSQLPTVVIAHNKTLAGQLFNELKQLFPK 86  Mycoplasma genitalium...
P75558  10 LFHLKSNFAPTGDQPAAIAKLAEFQTN---EQVLLGATGTGKTFTIANVIQKVQLPTVVIAHNKTLAGQLYQELKELFPN 86  Mycoplasma pneumoniae...
2D7D_A  84 NAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRT 163 Bacillus subtilis
Q50939  90 NAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKE 169 Neisseria gonorrhoeae
Q55170  85 NAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLRHSATRSLFERRDVIVVASISCIYGLGIPSQYLKAAVPLQV 164 Synechocystis sp. PCC...
Q56243  81 NAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVVER 160 Thermus thermophilus HB8
P94846  83 NRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKV 162 Helicobacter pylori 2...
O51776  88 NAVEYFVSYYDYYQPESYVPSKDLFIEKEATINTEIEIKRIRTVTSLAKRRDVIVVATVSSIYALGSPDFFKKSAREFFV 167 Borrelia burgdorferi B31
O83154  83 NAVEYFVSYYDYYQPESYVPARDLYIEKDASINAEINRMRLSATFSLMERRDVIVVATVSCIYGLGLPESWRDLRIHVEV 162 Treponema pallidum su...
O67708  87 NAVEYFVSYYDYYQPEAYIPEKDLYIEKDASINETLERFRHSATISVLERRDVIVVASVSCIYGLGKPEHYENLRIKLQR 166 Aquifex aeolicus VF5
P47319  87 NAVEYFISYFDFYQPEAYLPSKGIYIEKSATVNEAIKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPSDFVKYCLWFVV 166 Mycoplasma genitalium...
P75558  87 NAVEYFISYFDFYQPEAYLPAKGVYIEKSATVNEEIKRLRVSTLHSLSTRKDVIVVGSVASIYPTSSPADFAQYSLWLVV 166 Mycoplasma pneumoniae...
2D7D_A 164 EMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFP-ASRDEhCVRVEFFGDEIERIREVDALTGEILGDRDHVA 242 Bacillus subtilis
Q50939 170 GDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYP-AESSEnALRISLFDDEIDRLDMFDPLSGSLHQRVGRYT 248 Neisseria gonorrhoeae
Q55170 165 GAEYDPRLVIRDLVNVQYSRNDVELQRGRFRLKGDVLEIVP-AYEDR-VIRIEFFGDEVEALRLIDPVSGEILQSLDRIS 242 Synechocystis sp. PCC...
Q56243 161 GKPYPREVLLERLLELGYQRNDIDLSPGRFRAKGEVLEIFP-AYETE-PIRVELFGDEVERISQVHPVTGERLRELPGFV 238 Thermus thermophilus HB8
P94846 163 GEKRAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPaYNDAEfIR-IEFFGDEIERIAVFDALEKNEIKRLDSVM 241 Helicobacter pylori 2...
O51776 168 GQKISIKEISDIFVELYYERTLMNLERDKFSIKGDIVEIWPsSEHGEfAYRICLDFDEIVEIYRVSSFSKKNLGATNSFT 247 Borrelia burgdorferi B31
O83154 163 NQCLDLEDLKRQLVSLQYERNDAVLECGRFRVRGDVIEIFP--AYLEeFYRIECDWDRVVRIRRIHPVSGAVLREFEELT 240 Treponema pallidum su...
O67708 167 GIRLNLSKLLRKLVELGYQRNDFAIKRATFSVRGDVVEIVP-SHTEDyLVRVEFWDDEVERIVLMDALNRHVIKEVEEYS 245 Aquifex aeolicus VF5
P47319 167 GKDYDLKTIKDRLVSLNYVVNKQQLTPGKFRFQGDVLEVFP-GYSDAfVIRISFFDTKVEQICQIDPLTNKILNQLFEIK 245 Mycoplasma genitalium...
P75558 167 GKEYGLSELKTQLIHLNYVVNKQQLTPGKFRFQGDVVEVFP-GYAQDyVLRLSFFDQQLEQIARIDPLTNKVLETLNSFK 245 Mycoplasma pneumoniae...
2D7D_A 243 IFPASHFVTRAEKMEKAIQNIEKELEEQLKVMHENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGSTP 322 Bacillus subtilis
Q50939 249 VFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFSGKKEGEPP 328 Neisseria gonorrhoeae
Q55170 243 IYPARHFVTPEETLEKACQQIQTEMEQQVAFLEKNNLLVEAQRLSQRTRYDLEMLREVGYCNGVENYSRYLADRQAGEPP 322 Synechocystis sp. PCC...
Q56243 239 LFPATHYLSP-EGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARYFTGKAPGEPP 317 Thermus thermophilus HB8
P94846 242 LYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNETP 321 Helicobacter pylori 2...
O51776 248 LFAKSYFVIPYENVLEAIPKISHDLSLQCQYFKDNGKLVEAERLKQRVEYDLEMLRETGFCSGIENYSKYLSG-STMERP 326 Borrelia burgdorferi B31
O83154 241 VYPAKHFVLKEDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDLEMLGEMGYCHGIENYSAPIAGRKSGEPP 320 Treponema pallidum su...
O67708 246 VFPASHYIAPRPTVEQALKEIEKDLIERVKWFKSQGREVEAQRLYQRTMYDIEMIRELGHCKGIENYSRYFDGRKPGEPP 325 Aquifex aeolicus VF5
P47319 246 IGPADEYVVNQSDLDIAIKNIKQELQERVNYFNKQNLVERAQRLATITNHDLNDLKAWGFCSGVENYARHLELRMANSTP 325 Mycoplasma genitalium...
P75558 246 LGPADEYIVNQNDLGVALDTIKAELKDRLKYFERLNFPERAQRLQTITEHDLADLKAWGVCSGVENYARHLEHRPPHSKP 325 Mycoplasma pneumoniae...
2D7D_A 323 YTLLDYF---PDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPY 399 Bacillus subtilis
Q50939 329 PTLMDYL---PDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSATPAKY 405 Neisseria gonorrhoeae
Q55170 323 ECLVDYF---PEDWLLVIDESHVTIPQLRGMYNGDQARKKVLIDHGFRLPSAADNRPLKAEEFWQKVKQCVFVSATPGVW 399 Synechocystis sp. PCC...
Q56243 318 YTLLDYF---PEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPF 394 Thermus thermophilus HB8
P94846 322 FCLFDYLgifEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKL 401 Helicobacter pylori 2...
O51776 327 YCLFDFF---PKDXLLFVDESHVTLPQFRGMYNGDHSRKLNLVNFGFRLPAALENRPLKYDEFEALINQVVFVSATPGVE 403 Borrelia burgdorferi B31
O83154 321 VTLLHYF---PKDFVLFVDESHVTLPQLGAMYEGDRVRKQNLIDFGFRLPCARDNRPLKDSEFEALLNQAVFISATPGVK 397 Treponema pallidum su...
O67708 326 FTLLDYF---PEDFLLIIDESHMTIPQLRAMYNGDRSRKEKLVEYGWRLPSALDNRPLKFEEFLERINQVIYVSATPGDW 402 Aquifex aeolicus VF5
P47319 326 YSIFDYFk---gDWLLVIDESHQTLPQLNGMYNTDLSRKQSLIDYGFRLPSALDNRPLSFAELQQKMQKVIYVSATPRDK 402 Mycoplasma genitalium...
P75558 326 YNIFDYFtk--gEWLLVVDESHQTLPQIKGMYNTDISRKQSLIEYGFRLPSALDNRPLSYEEFRQGINKVIYVSATPREE 403 Mycoplasma pneumoniae...
2D7D_A 400 EIEHTDe-MVEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSE 478 Bacillus subtilis
Q50939 406 EEEHAGq-VVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRYLHSD 484 Neisseria gonorrhoeae
Q55170 400 EIEQSEarVIEQVIRPTGVLDPEIFVRPTTGQVDDLYGEIQTRVKLKERVLITTLTKRMAEDLTDYFSERGIKVQYLHSE 479 Synechocystis sp. PCC...
Q56243 395 ELAHSGr-VVEQIIRPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHE 473 Thermus thermophilus HB8
P94846 402 ELELSKknVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARGERVLITTLTKKMAEELCKYYAEWGLKARYMHSE 481 Helicobacter pylori 2...
O51776 404 ENEKSs-vVVDQIIRPTGLVDPEIITRHSDGQMEDLYSEIQKRVALKERVLITTLTKKMSEDLTEYLVNLGVRAKYLHSE 482 Borrelia burgdorferi B31
O83154 398 ERTQSv-qIVEQLIRPTGLLDPCIEVRKTDGQIEDICQRVKACSARNERSLVLTLTKKMAEDLTDYFNGLGIRTKYVHSE 476 Treponema pallidum su...
O67708 403 ELERSe-aVVEQIVRPTGLLDPVVEVRPKMNQLENLVKEIKEVKKRKERALVLTTTKRLAEEIADYLTERKIRAKYMHSE 481 Aquifex aeolicus VF5
P47319 403 EISLSQnnVIEQLVRPTYLVDPIIVVKPKDNQVEDLIEEIINQRQNNTRTFVTVLTIKMAENLTEYLKERKIKVAYIHKD 482 Mycoplasma genitalium...
P75558 404 EIQLSHnnVVEQLVRPTYLLDPEVIVKPKDNQVEDLVSEIINQRKHNGRTFVTVLTIKMAENLTDFLKERNIKVAYIHKD 483 Mycoplasma pneumoniae...
2D7D_A 479 IKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITK 558 Bacillus subtilis
Q50939 485 IDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYADKITD 564 Neisseria gonorrhoeae
Q55170 480 IQSIQRIEILQALRDGEFDVLIGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRAARHIRGQAILYADNFTD 559 Synechocystis sp. PCC...
Q56243 474 LDAFERQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSE 553 Thermus thermophilus HB8
P94846 482 IDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKITQ 561 Helicobacter pylori 2...
O51776 483 LDTLERVEVISLLRKSEIDVIVGINLLREGLDIPEVSLVAILDADKVGFLRSTTSLIQTIGRAARNSNGLVIMYYDKISL 562 Borrelia burgdorferi B31
O83154 477 IETIERVEILTSLRAGECEVLVGINLLREGIDLPEVAFIAILDANIVGFLRSTTSLIQIIGRAARNARGTVVMYADAISD 556 Treponema pallidum su...
O67708 482 LDAIERAQLIRELREGSIDVIVGVNLLREGLDLPEVSLVAIMDADKEGFLRSYQALIQTIGRAARNIHGKAILYADRITK 561 Aquifex aeolicus VF5
P47319 483 IKALERLLLINDLRRGEYECLVGINLLREGLDVPEVALVCIFDADIPGLPRDERSLIQIIGRAARNEHGRVVMYANHVTE 562 Mycoplasma genitalium...
P75558 484 IKALERLILLTDLRKGEYECLVGINLLREGLDVPEVSLVAIFDADIPGLPRDERSLIQIIGRAARNVHGRVIMYANTISE 563 Mycoplasma pneumoniae...
2D7D_A 559 SMEIAINETKRRREQQERFNEEHGITPKTINKEIRDVIRAtVAAEDKAEYKTKAA--------PKLSKMTKKERQKVVEQ 630 Bacillus subtilis
Q50939 565 SMKAAVDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDG-VYHEEDSGKGRRQGknkvkvgeIH----NEEDAIKEIAK 639 Neisseria gonorrhoeae
Q55170 560 SMQKAIAETERRRKIQQEYNEKHGITPQPINKRANNAILQf-LDISRRLNSQQLEev-----yEQAQDLPLEKIPDLIQQ 633 Synechocystis sp. PCC...
Q56243 554 AMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIR---PEGYEEAPLE--------------ADLSGEDLRERIAE 616 Thermus thermophilus HB8
P94846 562 SMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLrDDEIRIAKALKKDKmp----ksERE---------KIIKE 628 Helicobacter pylori 2...
O51776 563 AMREAIEETNRRRQIQIDYNKKNNITPKTIVKKIQNILEKeLNNKNKNVGYDFEKii----sgERLSK------KKLIDK 632 Borrelia burgdorferi B31
O83154 557 AMREAIEETARRRKIQMAYNRAHGITPRTIKKSIEDILVReQEVKKDAARVQVAPll----raADADVRTHAARKKMVQA 632 Treponema pallidum su...
O67708 562 AMEKAIQETQRRRKIQEEFNKKHGITPKSIKKPVKELLAIeELDYVSVPEELPKG------------VKSEEDILKKIEK 629 Aquifex aeolicus VF5
P47319 563 QMQKAIDETKRRRTVQMEYNKLHNKTPKTVVKPLTFVQPIkLKAKSNAEKNA-----------------------ALIKQ 619 Mycoplasma genitalium...
P75558 564 QMDKAIKETQRRRTIQMAYNEQHHKTPMTVQKPITLNQPIkLKTKSSEQQKA-----------------------ALIKQ 620 Mycoplasma pneumoniae...
2D7D_A 631 MEHEMKEAAKALDFERAAELRDLLLELK 658 Bacillus subtilis
Q50939 640 LEKAMQQAARDLQFEEAAVLRDRIRNIK 667 Neisseria gonorrhoeae
Q55170 634 LEEKMQEAAKKQEFEVAAIYRDRIQHLR 661 Synechocystis sp. PCC 6803 substr. Kazusa
Q56243 617 LELAMWQAAEALDFERAARLRDEIRALE 644 Thermus thermophilus HB8
P94846 629 LDKKMRECTKNLDFEEAMRLRDEIAQLR 656 Helicobacter pylori 26695
O51776 633 LKFDLEEAVNDERFEDAIVLRDKIKELS 660 Borrelia burgdorferi B31
O83154 633 LRLHMKVCARELRFEEAALIRDKILQLQ 660 Treponema pallidum subsp. pallidum str. Nichols
O67708 630 LEKEMWKYAQNWEFEKAAKVRDEIKKLK 657 Aquifex aeolicus VF5
P47319 620 LTKEMKKAAANQNYELAIEIRDSIFELE 647 Mycoplasma genitalium G37
P75558 621 LTKEMKQAAANQNYELAIEIRDSIFELE 648 Mycoplasma pneumoniae M129
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