1LF7,2OVD,3OJY,2RD7


Conserved Protein Domain Family
lipocalin_C8gamma

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cd19417: lipocalin_C8gamma 
complement protein C8 gamma
Human complement protein C8 gamma, together with C8alpha and C8beta, form one of five components of the cytolytic membrane attack complex (MAC), a pore-like structure that assembles on bacterial membranes. C8alpha and C8gamma form a disulfide-linked heterodimer that is noncovalently associated with C8beta. MAC plays an important role in the defense against gram-negative bacteria and other pathogenic organisms. C8gamma belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.
Statistics
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PSSM-Id: 381192
Aligned: 9 rows
Threshold Bit Score: 277.785
Created: 22-Jun-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand bindingC8 gamma
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding cavity [chemical binding site]
Evidence:
  • Comment:hydrophobic cavity binds different hydrophobic ligands; ligands are bound within the beta-barrel in a central internal water-filled cavity lined with polar and hydrophobic amino acids
  • Comment:based on human C8gamma and on other lipocalin/cytosolic fatty-acid binding protein family members with structure
  • Structure:2OVD; Homo sapiens C8gamma with bound lauric acid pseudoligand, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #   #                       # #           # # #          # # #        
1LF7_A     17 QPKANFDAQQFAGTWLLVAVGSAGRFLQEQGHRAEATTLHVAPQG-----TAMAVSTFRKLDGICWQVRQLYGDTGVLGR 91  human
CAF22027   51 PPAQNIDIQQMGGPWYLVNAASKCNFLMKNGLKVEATVMTLTSPSsq--nPTLSVSTTTRLNHQCWEILQAYTITPTPGR 128 rainbow trout
NP_957157  48 APGQNINIDQMSGKWHLLTVASRCKNLLESGFKTESTSLTWNITA-----DTVTVGTVRKLNFVCWEIKQNYMKTKTPGQ 122 zebrafish
2OVD_A     17 QPKANFDAQQFAGTWLLVAVGSAARFLQEQGHRAEATTLHVAPQG-----TAMAVSTFRKLDGICWQVRQLYGDTGVLGR 91  human
3OJY_C     17 QPKANFDAQQFAGTWLLVAVGSACRFLQEQGHRAEATTLHVAPQG-----TAMAVSTFRKLDGICWQVRQLYGDTGVLGR 91  human
2RD7_C     19 QPKANFDAQQFAGTWLLVAVGSACRFLQEQGHRAEATTLHVAPQG-----TAMAVSTFRKLDGICWQVRQLYGDTGVLGR 93  human
BAI52946   45 VPAQDIDFNKLSGKWYLLSVASRCKYLLEHGFKVEGTVITMFAPDsp--nAPIQVSTFTKLNYQCWEIKQKYETSQNLGR 122 Clarias macrocephalus
AAI66971   47 QAVGNFDPNRFAGKWFLLSVASECNYLKLNNHRVEATIAQVTASKkpkvgDTLTVSTFRKLDGICWEIKQEYRENKQKGR 126 western clawed frog
AFM89896   37 QIQENFNIDQFSGKWYLIGVASHCTYLRSSSYSVEAVAMQVSNEK-----ETVRTNTLHKMEGICWDIKQEYKKTRTIGK 111 ghost shark
Feature 1     # #        # # #        # # # #      # # #                                      
1LF7_A     92 FLLQARgaRGAVHVVVAETDYQSFAVLYLERA--GQLSVKLYARSl-PVSDSVLSGFEQRVQEAHLTEDQIFYFPKYGFC 168 human
CAF22027  129 LVLNGSrpLLNTDIVIGESDYSSYAVFYYQKQ--GQLTMKLYGRSkdTLSEAILDKFEDLAEKKGLGLAYVFAFPNYSHC 206 rainbow trout
NP_957157 123 LFLKGKrpSDNVDIMVLETDYSTYAMLVFKRA--EKITMKLYGRSg-EVPDNIVDKFEDRAKTFNLGLDVVFQFPDYGFC 199 zebrafish
2OVD_A     92 FLLQARgaRGAVHVVVAETDYQSFAVLYLERA--GQLSVKLYARSl-PVSDSVLSGFEQRVQEAHLTEDQIFYFPKYGFC 168 human
3OJY_C     92 FLLQARdaRGAVHVVVAETDYQSFAVLYLERA--GQLSVKLYARSl-PVSDSVLSGFEQRVQEAHLTEDQIFYFPKYGFC 168 human
2RD7_C     94 FLLQARdaRGAVHVVVAETDYQSFAVLYLERA--GQLSVKLYARSl-PVSDSVLSGFEQRVQEAHLTEDQIFYFPKYGFC 170 human
BAI52946  123 FLLKAKipVKNTEIIIVETNYNSYAILLYKQM--NKLPMKLYGRTp-EIAESIVDKFEDMAKKQDLGLDVVFQFPTYGFC 199 Clarias macrocephalus
AAI66971  127 FLLLGRgsKGPIDMVVGDTDYESYAILFYQRQ--RKLSMKLYGRKt-QLNNNIFTRFEALAGKQELGLESLYTFPAYGFC 203 western clawed frog
AFM89896  112 FYRKKR--GVTTYMAVGETDYSKYAIIAVQQTpkQKLTLKLYGRSt-ELDENIQMKFRQHVIQHKIPEIFIYEFPSYGHC 188 ghost shark
Feature 1               
1LF7_A    169 EAADQFHVLD 178 human
CAF22027  207 ESVDKDHVIN 216 rainbow trout
NP_957157 200 ESAEKVLDLT 209 zebrafish
2OVD_A    169 EAADQFHVLD 178 human
3OJY_C    169 EAADQFHVLD 178 human
2RD7_C    171 EAADQFHVLD 180 human
BAI52946  200 QSADKEHTLV 209 Clarias macrocephalus
AAI66971  204 ESADQFHILD 213 western clawed frog
AFM89896  189 QSADEFHRLD 198 ghost shark

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